Regulon of RutR in Roseovarius nubinhibens ISM

Properties
Regulator type:	Transcription factor
TF locus tag:	ISM_13625
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Rhodobacterales
Statistics of regulated genes:
- Genes	15
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 62 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Rhodobacterales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -53 Score: 5.8 Sequence: TCTTTACCGTTTGGTAAAAT Locus tag: ISM_11210 Name: pytM Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein Locus tag: ISM_11215 Name: pytN Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein Locus tag: ISM_11220 Name: pytO Funciton: Predicted pyrimidine ABC transporter, permease protein 1 Locus tag: ISM_11225 Name: pytQ Funciton: Predicted pyrimidine ABC transporter, permease protein 2 Locus tag: ISM_11230 Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1)
	ISM_11210	pytM	Predicted pyrimidine ABC transporter, substrate-binding protein
	ISM_11215	pytN	Predicted pyrimidine ABC transporter, ATP-binding protein
	ISM_11220	pytO	Predicted pyrimidine ABC transporter, permease protein 1
	ISM_11225	pytQ	Predicted pyrimidine ABC transporter, permease protein 2
	ISM_11230	codA	Cytosine deaminase (EC 3.5.4.1)
Position: -147 Score: 6 Sequence: ATTTTACCATTTGGTAAAGT Locus tag: ISM_13625 Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
	ISM_13625	rutR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -75 Score: 6.2 Sequence: ATTTTACCAATTGATAAAAT Locus tag: ISM_13640 Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism Locus tag: ISM_13635 Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
	ISM_13640	pydX	Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
	ISM_13635	pydA	Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -41 Score: 5.9 Sequence: ACTTTACCAAATGGTAAAAT Locus tag: ISM_13620 Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6) Locus tag: ISM_13615 Name: pydB Funciton: phenylhydantoinase Locus tag: ISM_13610 Name: RSP_1242 Funciton: Predicted lyase Locus tag: ISM_13605 Name: pytA Funciton: Pyrimidine ABC transporter, ATP-binding protein Locus tag: ISM_13600 Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1 Locus tag: ISM_13595 Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2 Locus tag: ISM_13590 Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein
	ISM_13620	pydC	Beta-ureidopropionase (EC 3.5.1.6)
	ISM_13615	pydB	phenylhydantoinase
	ISM_13610	RSP_1242	Predicted lyase
	ISM_13605	pytA	Pyrimidine ABC transporter, ATP-binding protein
	ISM_13600	pytB	Pyrimidine ABC transporter, permease protein 1
	ISM_13595	pytC	Pyrimidine ABC transporter, permease protein 2
	ISM_13590	pytD	Pyrimidine ABC transporter, substrate-binding protein

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD