Regulon of RutR in Loktanella vestfoldensis SKA53

Properties
Regulator type:	Transcription factor
TF locus tag:	SKA53_10679
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Rhodobacterales
Statistics of regulated genes:
- Genes	12
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 62 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Rhodobacterales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -59 Score: 6.2 Sequence: GTTTGACCAATTGGTCAAAA Locus tag: SKA53_09929 Name: deoC Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4) Locus tag: SKA53_09934 Name: ald Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
	SKA53_09929	deoC	Deoxyribose-phosphate aldolase (EC 4.1.2.4)
	SKA53_09934	ald	Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -143 Score: 6 Sequence: GTTTGACCAGATGGTCAAAA Locus tag: SKA53_10679 Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
	SKA53_10679	rutR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -67 Score: 5.8 Sequence: AATTTACCGTTTGATAAAAA Locus tag: SKA53_10689 Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism Locus tag: SKA53_10684 Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
	SKA53_10689	pydX	Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
	SKA53_10684	pydA	Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -39 Score: 5.9 Sequence: TTTTGACCATCTGGTCAAAC Locus tag: SKA53_10674 Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6) Locus tag: SKA53_10669 Name: SKA53_10669 Funciton: Hypothetical protein Locus tag: SKA53_10664 Name: pydB Funciton: phenylhydantoinase Locus tag: SKA53_10659 Name: pytA Funciton: Pyrimidine ABC transporter, ATP-binding protein Locus tag: SKA53_10654 Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1 Locus tag: SKA53_10649 Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2 Locus tag: SKA53_10644 Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein
	SKA53_10674	pydC	Beta-ureidopropionase (EC 3.5.1.6)
	SKA53_10669	SKA53_10669	Hypothetical protein
	SKA53_10664	pydB	phenylhydantoinase
	SKA53_10659	pytA	Pyrimidine ABC transporter, ATP-binding protein
	SKA53_10654	pytB	Pyrimidine ABC transporter, permease protein 1
	SKA53_10649	pytC	Pyrimidine ABC transporter, permease protein 2
	SKA53_10644	pytD	Pyrimidine ABC transporter, substrate-binding protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD