Regulon of RutR in Roseovarius sp. 217
| Regulator type: | Transcription factor |
| TF locus tag: | ROS217_12316 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Rhodobacterales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -58
Score: 5.8 Sequence: TTTTTACCATTTGGTAAACT
Locus tag: ROS217_12316
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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Position: -44
Score: 6.2 Sequence: ATTTTACCAATTGGTAAAAC
Locus tag: ROS217_10977
Name: pytM Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: ROS217_10972
Name: pytN Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: ROS217_10967
Name: pytO Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: ROS217_10962
Name: pytQ Funciton: Predicted pyrimidine ABC transporter, permease protein 2
Locus tag: ROS217_10957
Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1) |
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pytM
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Predicted pyrimidine ABC transporter, substrate-binding protein
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pytN
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Predicted pyrimidine ABC transporter, ATP-binding protein
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pytO
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Predicted pyrimidine ABC transporter, permease protein 1
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pytQ
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Predicted pyrimidine ABC transporter, permease protein 2
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codA
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Cytosine deaminase (EC 3.5.4.1)
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Position: -69
Score: 6.2 Sequence: ATTTTACCAATTGATAAAAT
Locus tag: ROS217_06720
Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: ROS217_06715
Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) |
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pydX
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Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
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pydA
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Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
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Position: -33
Score: 5.7 Sequence: AGTTTACCAAATGGTAAAAA
Locus tag: ROS217_12311
Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: ROS217_12306
Name: pydB Funciton: phenylhydantoinase
Locus tag: ROS217_12301
Name: pytA Funciton: Pyrimidine ABC transporter, ATP-binding protein
Locus tag: ROS217_12296
Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: ROS217_12291
Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: ROS217_12286
Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein |
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pydC
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Beta-ureidopropionase (EC 3.5.1.6)
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pydB
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phenylhydantoinase
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pytA
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Pyrimidine ABC transporter, ATP-binding protein
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pytB
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Pyrimidine ABC transporter, permease protein 1
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pytC
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Pyrimidine ABC transporter, permease protein 2
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pytD
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Pyrimidine ABC transporter, substrate-binding protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |