Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of IscR in Silicibacter TM1040

Properties
Regulator type: Transcription factor
TF locus tag: TM1040_1240
Regulator family: Rrf2
Regulation mode: repressor (activator)
Biological process: Iron-sulfur cluster biogenesis; Iron homeostasis
Effector: Iron-sulfur cluster redox state; Iron ion, (Fe2+)
Regulog: IscR - Rhodobacterales
Statistics of regulated genes:
- Genes 26
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -116
Score: 4.5
Sequence: TCCGACAAAAATACTAGGG
Locus tag: TM1040_2633
Name: TM1040_2633
Funciton: hypothetical protein
TM1040_2633
TM1040_2633
hypothetical protein
Position: -143
Score: 3.9
Sequence: CTTGACAGATTTAATAAAT
Locus tag: TM1040_0347
Name: hmuR
Funciton: TonB-dependent hemin , ferrichrome receptor
Locus tag: TM1040_0348
Name: Mlr1156
Funciton: Mlr1156 protein
Locus tag: TM1040_0349
Name: exbB
Funciton: Ferric siderophore transport system, biopolymer transport protein ExbB
Locus tag: TM1040_0350
Name: exbD1
Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD
Locus tag: TM1040_0351
Name: exbD2
Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD
Locus tag: TM1040_0352
Name: tonB
Funciton: Ferric siderophore transport system, periplasmic binding protein TonB
TM1040_0347
hmuR
TonB-dependent hemin , ferrichrome receptor
TM1040_0348
Mlr1156
Mlr1156 protein
TM1040_0349
exbB
Ferric siderophore transport system, biopolymer transport protein ExbB
TM1040_0350
exbD1
Ferric siderophore transport system, periplasmic binding protein ExbD
TM1040_0351
exbD2
Ferric siderophore transport system, periplasmic binding protein ExbD
TM1040_0352
tonB
Ferric siderophore transport system, periplasmic binding protein TonB
Position: -50
Score: 3.7
Sequence: TCCGACAAAAATGCTTGAA
Locus tag: TM1040_0122
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
TM1040_0122
fbpB
Ferric iron ABC transporter, permease protein
Position: -103
Score: 4.1
Sequence: CCTGATCAAAACAGTCCGA
Position: -71
Score: 4.2
Sequence: GCTTATTCTTTTACTCGGA
Locus tag: TM1040_2200
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: TM1040_2201
Name: bfr
Funciton: Bacterioferritin (cytochrome b1)
Locus tag: TM1040_2202
Name: COG3488
Funciton: Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
Locus tag: TM1040_2203
Name: COG3489
Funciton: Predicted periplasmic lipoprotein
Locus tag: TM1040_2204
Name: COG3490
Funciton: Uncharacterised conserved protein UCP028101
TM1040_2200
bfd
Bacterioferritin-associated ferredoxin
TM1040_2201
bfr
Bacterioferritin (cytochrome b1)
TM1040_2202
COG3488
Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
TM1040_2203
COG3489
Predicted periplasmic lipoprotein
TM1040_2204
COG3490
Uncharacterised conserved protein UCP028101
Position: -258
Score: 4.7
Sequence: TCTGACCAAATAAATCAGG
Locus tag: TM1040_2198
Name: hemP
Funciton: Hemin uptake protein HemP
Locus tag: TM1040_2199
Name: irpA
Funciton: Iron-regulated protein A precursor
TM1040_2198
hemP
Hemin uptake protein HemP
TM1040_2199
irpA
Iron-regulated protein A precursor
Position: -137
Score: 3.9
Sequence: CTTGACGAATTTTATCCGG
Locus tag: TM1040_1240
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR, Rrf2 family
Locus tag: TM1040_1241
Name: iscS
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: TM1040_1242
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: TM1040_1243
Name: RSP_0439
Funciton: protein of unknown function DUF74
Locus tag: TM1040_1244
Name: Jann_2362
Funciton: SAM-dependent methyltransferases
Locus tag: TM1040_1245
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: TM1040_1246
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: TM1040_1247
Name: RSP_0433
Funciton: hypothetical protein
Locus tag: TM1040_1248
Name: null
Funciton: hypothetical protein
Locus tag: TM1040_1249
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
TM1040_1240
iscR
Iron-sulfur cluster regulator IscR, Rrf2 family
TM1040_1241
iscS
Cysteine desulfurase (EC 2.8.1.7)
TM1040_1242
sufB
Iron-sulfur cluster assembly protein SufB
TM1040_1243
RSP_0439
protein of unknown function DUF74
TM1040_1244
Jann_2362
SAM-dependent methyltransferases
TM1040_1245
sufC
Iron-sulfur cluster assembly ATPase protein SufC
TM1040_1246
sufD
Iron-sulfur cluster assembly protein SufD
TM1040_1247
RSP_0433
hypothetical protein
TM1040_1248
hypothetical protein
TM1040_1249
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Position: -126
Score: 5
Sequence: TCTGACTGAATTTATCGGA
Locus tag: TM1040_0124
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
TM1040_0124
fbpA
Ferric iron ABC transporter, iron-binding protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise