Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Silicibacter TM1040

Properties
Regulator type: Transcription factor
TF locus tag: TM1040_1556
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhodobacterales
Statistics of regulated genes:
- Genes 7
- Operons 1
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -98
Score: 5.5
Sequence: AGTTACGTAAACGTCAAG
Locus tag: TM1040_1556
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: TM1040_1557
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: TM1040_1558
Name: null
Funciton: hypothetical protein
Locus tag: TM1040_1559
Name: acdA3
Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: TM1040_1560
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: TM1040_1561
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: TM1040_1562
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
hypothetical protein
acdA3
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
PF04828
Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD