Regulon of LiuR in Silicibacter TM1040

Properties
Regulator type:	Transcription factor
TF locus tag:	TM1040_1556
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Rhodobacterales
Statistics of regulated genes:
- Genes	7
- Operons	1
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Rhodobacterales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -98 Score: 5.5 Sequence: AGTTACGTAAACGTCAAG Locus tag: TM1040_1556 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: TM1040_1557 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) Locus tag: TM1040_1558 Name: null Funciton: hypothetical protein Locus tag: TM1040_1559 Name: acdA3 Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) Locus tag: TM1040_1560 Name: PF04828 Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) Locus tag: TM1040_1561 Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Locus tag: TM1040_1562 Name: acdB Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	TM1040_1556	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	TM1040_1557	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
	TM1040_1558		hypothetical protein
	TM1040_1559	acdA3	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
	TM1040_1560	PF04828	Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
	TM1040_1561	acdA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	TM1040_1562	acdB	Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD