Regulog LiuR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Rhodobacterales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 5 | 1 |
| Paracoccus denitrificans PD1222 | 5 | 1 |
| Jannaschia sp. CCS1 | 9 | 1 |
| Rhodobacterales bacterium HTCC2654 | 7 | 1 |
| Oceanicola granulosus HTCC2516 | ||
| Loktanella vestfoldensis SKA53 | 5 | 1 |
| Oceanicola batsensis HTCC2597 | 6 | 1 |
| Roseovarius nubinhibens ISM | 6 | 1 |
| Roseovarius sp. 217 | 7 | 1 |
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | 7 | 1 |
| Silicibacter pomeroyi DSS-3 | 7 | 1 |
| Roseobacter sp. MED193 | 8 | 1 |
| Hyphomonas neptunium ATCC 15444 | 12 | 6 |
| Oceanicaulis alexandrii HTCC2633 | 8 | 1 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| acdL2 |
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Hyphomonas neptunium ATCC 15444 Site: position = -95 score = 5.44903 sequence = GTTTACGTGCGCGTCACC Gene: HNE_2094: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
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Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
| acdH2 |
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Gene: EE36_00530: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62) |
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Gene: HNE_2093: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62) |
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Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62) |
| CRON 2. | ||||||||||||||||
| liuR |
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Rhodobacter sphaeroides 2.4.1 Site: position = -87 score = 6.27315 sequence = GTTTACGTCAACGTCAAG Gene: RSP_2200: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Paracoccus denitrificans PD1222 Site: position = 5 score = 5.2718 sequence = CCTTACGCGAACGTCAAC Gene: Pden_2867: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Jannaschia sp. CCS1 Site: position = -93 score = 5.17628 sequence = AATTACGTAAACGTCATC Gene: Jann_2969: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Rhodobacterales bacterium HTCC2654 Site: position = -69 score = 5.72564 sequence = GTTGACGTAAACGTAATC Gene: RB2654_20563: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: OG2516_13591: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Loktanella vestfoldensis SKA53 Site: position = -84 score = 6.02906 sequence = GTTTACGTAAACGTCACC Gene: SKA53_09319: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Oceanicola batsensis HTCC2597 Site: position = -84 score = 5.29954 sequence = GCTTACGCTTGCGTCAAC Gene: OB2597_06240: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Roseovarius nubinhibens ISM Site: position = -79 score = 5.76226 sequence = ACTTACGTAAACGTCAAT Gene: ISM_02035: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Roseovarius sp. 217 Site: position = -117 score = 4.58294 sequence = TCTTACGTCAACTTCAAA Gene: ROS217_11336: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: EE36_03633: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Silicibacter TM1040 Site: position = -98 score = 5.53768 sequence = AGTTACGTAAACGTCAAG Gene: TM1040_1556: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Silicibacter pomeroyi DSS-3 Site: position = -87 score = 6.27315 sequence = GCTTACGTCAACGTCAAG Gene: SPO2914: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Roseobacter sp. MED193 Site: position = -105 score = 6.39046 sequence = GCTTACGTAAACGTCAAG Gene: MED193_05934: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Hyphomonas neptunium ATCC 15444 Site: position = -83 score = 5.13861 sequence = GTTGACGTGCGCGGAAAG Gene: HNE_0667: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Oceanicaulis alexandrii HTCC2633 Site: position = -36 score = 5.90252 sequence = GTTGACGTTCACGTCAAG Gene: OA2633_06094: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| acdH |
Gene: RSP_2199: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Pden_2868: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Jann_2970: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: RB2654_20558: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: OG2516_13586: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: SKA53_09324: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: OB2597_06245: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: ISM_02040: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: ROS217_11341: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: EE36_03638: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: TM1040_1557: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: SPO2915: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: MED193_05939: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: HNE_0668: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: OA2633_06089: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| Jann_2971 |
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Gene: Jann_2971: hypothetical protein |
Gene: RB2654_20553: hypothetical protein |
Gene: OG2516_13581: hypothetical protein |
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Gene: OB2597_06250: hypothetical protein |
Gene: ISM_02045: hypothetical protein |
Gene: ROS217_11346: hypothetical protein |
Gene: EE36_03643: hypothetical protein |
Gene: TM1040_1558: hypothetical protein |
Gene: SPO2916: hypothetical protein |
Gene: MED193_05944: hypothetical protein |
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hypothetical protein |
| Jann_2972 |
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Gene: Jann_2972: hypothetical protein |
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hypothetical protein |
| PF04828 |
Gene: RSP_2198: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: Pden_2869: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: Jann_2973: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: RB2654_20543: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: OG2516_13576: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: SKA53_09329: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: OB2597_06255: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: ISM_02050: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: ROS217_11356: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: EE36_03648: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: TM1040_1560: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: SPO2917: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
Gene: MED193_05954: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
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Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) |
| Jann_2974 |
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Gene: Jann_2974: hypothetical protein |
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hypothetical protein |
| acdA |
Gene: RSP_2197: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Pden_2870: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Jann_2975: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: RB2654_20538: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: OG2516_13571: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: SKA53_09334: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: OB2597_06260: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: ISM_02055: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: ROS217_11361: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: EE36_03653: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: TM1040_1561: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: SPO2918: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: MED193_05959: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: HNE_0671: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: OA2633_06074: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| Jann_2976 |
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Gene: Jann_2976: hypothetical protein |
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hypothetical protein |
| acdB |
Gene: RSP_2196: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: Pden_2871: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: Jann_2977: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: RB2654_20533: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: OG2516_13561: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: SKA53_09339: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: OB2597_06265: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: ISM_02060: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: ROS217_11366: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: EE36_03663: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: TM1040_1562: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: SPO2920: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: MED193_05969: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: HNE_0672: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: OA2633_06059: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| acdL |
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Gene: SPO2380: acyl-CoA dehydrogenase |
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Hyphomonas neptunium ATCC 15444 Site: position = -56 score = 5.76004 sequence = GCTTACGTGAACGTAAGC Site: position = -50 score = 4.57942 sequence = GTGAACGTAAGCGGCAAC Gene: HNE_0669: acyl-CoA dehydrogenase |
Gene: OA2633_06084: acyl-CoA dehydrogenase |
acyl-CoA dehydrogenase |
| OA2633_06079 |
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Gene: OA2633_06079: hypothetical protein |
hypothetical protein |
| OA2633_06069 |
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Gene: OA2633_06069: hypothetical protein |
hypothetical protein |
| OA2633_06064 |
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Gene: OA2633_06064: hypothetical protein |
hypothetical protein |
| acdA3 |
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Gene: OB2597_17767: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
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Gene: ROS217_11351: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
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Gene: TM1040_1559: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Gene: SPO0582: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Gene: MED193_05949: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
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Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
| SPO2919 |
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Gene: SPO2919: hypothetical protein |
Gene: MED193_05964: hypothetical protein |
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hypothetical protein |
| RB2654_20548 |
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Gene: RB2654_20548: hypothetical protein |
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hypothetical protein |
| HNE_0670 |
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Gene: HNE_0670: hypothetical protein |
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hypothetical protein |
| CRON 3. | ||||||||||||||||
| acdA2 |
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Gene: TM1040_0361: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: SPO0773: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: MED193_10206: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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Hyphomonas neptunium ATCC 15444 Site: position = -88 score = 5.43157 sequence = GTTTACGTCAACGGAAGG Gene: HNE_2706: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| CRON 4. | ||||||||||||||||
| HNE_2820 |
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Hyphomonas neptunium ATCC 15444 Site: position = -64 score = 5.18713 sequence = GTTGACGTGAACGTCTGG Gene: HNE_2820: oxidoreductase, short chain dehydrogenase/reductase family |
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oxidoreductase, short chain dehydrogenase/reductase family |
| CRON 5. | ||||||||||||||||
| eftB |
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Gene: Pden_2550: Electron transfer flavoprotein, beta subunit |
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Hyphomonas neptunium ATCC 15444 Site: position = -98 score = 5.00765 sequence = CCTCACGTAAGCGTCAAG Gene: HNE_3471: Electron transfer flavoprotein, beta subunit |
Gene: OA2633_12355: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
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Gene: Pden_2551: Electron transfer flavoprotein, alpha subunit |
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Gene: HNE_3470: Electron transfer flavoprotein, alpha subunit |
Gene: OA2633_12350: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |