Regulog LiuR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Rhodobacterales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1	5	1
Paracoccus denitrificans PD1222	5	1
Jannaschia sp. CCS1	9	1
Rhodobacterales bacterium HTCC2654	7	1
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53	5	1
Oceanicola batsensis HTCC2597	6	1
Roseovarius nubinhibens ISM	6	1
Roseovarius sp. 217	7	1
Sulfitobacter sp. EE-36
Silicibacter TM1040	7	1
Silicibacter pomeroyi DSS-3	7	1
Roseobacter sp. MED193	8	1
Hyphomonas neptunium ATCC 15444	12	6
Oceanicaulis alexandrii HTCC2633	8	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
acdL2	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	* Hyphomonas neptunium ATCC 15444 Site: position = -95 score = 5.44903 sequence = GTTTACGTGCGCGTCACC Gene: HNE_2094: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Oceanicaulis alexandrii HTCC2633	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdH2	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36 Gene: EE36_00530: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444 Gene: HNE_2093: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)	Oceanicaulis alexandrii HTCC2633	Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)

CRON 2.
liuR	* Rhodobacter sphaeroides 2.4.1 Site: position = -87 score = 6.27315 sequence = GTTTACGTCAACGTCAAG Gene: RSP_2200: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Paracoccus denitrificans PD1222 Site: position = 5 score = 5.2718 sequence = CCTTACGCGAACGTCAAC Gene: Pden_2867: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Jannaschia sp. CCS1 Site: position = -93 score = 5.17628 sequence = AATTACGTAAACGTCATC Gene: Jann_2969: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Rhodobacterales bacterium HTCC2654 Site: position = -69 score = 5.72564 sequence = GTTGACGTAAACGTAATC Gene: RB2654_20563: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Oceanicola granulosus HTCC2516 Gene: OG2516_13591: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Loktanella vestfoldensis SKA53 Site: position = -84 score = 6.02906 sequence = GTTTACGTAAACGTCACC Gene: SKA53_09319: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Oceanicola batsensis HTCC2597 Site: position = -84 score = 5.29954 sequence = GCTTACGCTTGCGTCAAC Gene: OB2597_06240: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Roseovarius nubinhibens ISM Site: position = -79 score = 5.76226 sequence = ACTTACGTAAACGTCAAT Gene: ISM_02035: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Roseovarius sp. 217 Site: position = -117 score = 4.58294 sequence = TCTTACGTCAACTTCAAA Gene: ROS217_11336: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Sulfitobacter sp. EE-36 Gene: EE36_03633: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Silicibacter TM1040 Site: position = -98 score = 5.53768 sequence = AGTTACGTAAACGTCAAG Gene: TM1040_1556: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Silicibacter pomeroyi DSS-3 Site: position = -87 score = 6.27315 sequence = GCTTACGTCAACGTCAAG Gene: SPO2914: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Roseobacter sp. MED193 Site: position = -105 score = 6.39046 sequence = GCTTACGTAAACGTCAAG Gene: MED193_05934: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Hyphomonas neptunium ATCC 15444 Site: position = -83 score = 5.13861 sequence = GTTGACGTGCGCGGAAAG Gene: HNE_0667: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Oceanicaulis alexandrii HTCC2633 Site: position = -36 score = 5.90252 sequence = GTTGACGTTCACGTCAAG Gene: OA2633_06094: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2199: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Paracoccus denitrificans PD1222 Gene: Pden_2868: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Jannaschia sp. CCS1 Gene: Jann_2970: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20558: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Oceanicola granulosus HTCC2516 Gene: OG2516_13586: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Loktanella vestfoldensis SKA53 Gene: SKA53_09324: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Oceanicola batsensis HTCC2597 Gene: OB2597_06245: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Roseovarius nubinhibens ISM Gene: ISM_02040: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Roseovarius sp. 217 Gene: ROS217_11341: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Sulfitobacter sp. EE-36 Gene: EE36_03638: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Silicibacter TM1040 Gene: TM1040_1557: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Silicibacter pomeroyi DSS-3 Gene: SPO2915: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Roseobacter sp. MED193 Gene: MED193_05939: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Hyphomonas neptunium ATCC 15444 Gene: HNE_0668: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06089: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Jann_2971	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2971: hypothetical protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20553: hypothetical protein	Oceanicola granulosus HTCC2516 Gene: OG2516_13581: hypothetical protein	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_06250: hypothetical protein	Roseovarius nubinhibens ISM Gene: ISM_02045: hypothetical protein	Roseovarius sp. 217 Gene: ROS217_11346: hypothetical protein	Sulfitobacter sp. EE-36 Gene: EE36_03643: hypothetical protein	Silicibacter TM1040 Gene: TM1040_1558: hypothetical protein	Silicibacter pomeroyi DSS-3 Gene: SPO2916: hypothetical protein	Roseobacter sp. MED193 Gene: MED193_05944: hypothetical protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
Jann_2972	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2972: hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
PF04828	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2198: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Paracoccus denitrificans PD1222 Gene: Pden_2869: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Jannaschia sp. CCS1 Gene: Jann_2973: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20543: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Oceanicola granulosus HTCC2516 Gene: OG2516_13576: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Loktanella vestfoldensis SKA53 Gene: SKA53_09329: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Oceanicola batsensis HTCC2597 Gene: OB2597_06255: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Roseovarius nubinhibens ISM Gene: ISM_02050: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Roseovarius sp. 217 Gene: ROS217_11356: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Sulfitobacter sp. EE-36 Gene: EE36_03648: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Silicibacter TM1040 Gene: TM1040_1560: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Silicibacter pomeroyi DSS-3 Gene: SPO2917: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Roseobacter sp. MED193 Gene: MED193_05954: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Jann_2974	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2974: hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
acdA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2197: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Paracoccus denitrificans PD1222 Gene: Pden_2870: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Jannaschia sp. CCS1 Gene: Jann_2975: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20538: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Oceanicola granulosus HTCC2516 Gene: OG2516_13571: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Loktanella vestfoldensis SKA53 Gene: SKA53_09334: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Oceanicola batsensis HTCC2597 Gene: OB2597_06260: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Roseovarius nubinhibens ISM Gene: ISM_02055: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Roseovarius sp. 217 Gene: ROS217_11361: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Sulfitobacter sp. EE-36 Gene: EE36_03653: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Silicibacter TM1040 Gene: TM1040_1561: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Silicibacter pomeroyi DSS-3 Gene: SPO2918: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Roseobacter sp. MED193 Gene: MED193_05959: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Hyphomonas neptunium ATCC 15444 Gene: HNE_0671: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06074: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Jann_2976	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_2976: hypothetical protein	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
acdB	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2196: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Paracoccus denitrificans PD1222 Gene: Pden_2871: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Jannaschia sp. CCS1 Gene: Jann_2977: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20533: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Oceanicola granulosus HTCC2516 Gene: OG2516_13561: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Loktanella vestfoldensis SKA53 Gene: SKA53_09339: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Oceanicola batsensis HTCC2597 Gene: OB2597_06265: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Roseovarius nubinhibens ISM Gene: ISM_02060: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Roseovarius sp. 217 Gene: ROS217_11366: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Sulfitobacter sp. EE-36 Gene: EE36_03663: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Silicibacter TM1040 Gene: TM1040_1562: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Silicibacter pomeroyi DSS-3 Gene: SPO2920: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Roseobacter sp. MED193 Gene: MED193_05969: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Hyphomonas neptunium ATCC 15444 Gene: HNE_0672: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06059: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
acdL	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2380: acyl-CoA dehydrogenase	Roseobacter sp. MED193	* Hyphomonas neptunium ATCC 15444 Site: position = -56 score = 5.76004 sequence = GCTTACGTGAACGTAAGC Site: position = -50 score = 4.57942 sequence = GTGAACGTAAGCGGCAAC Gene: HNE_0669: acyl-CoA dehydrogenase	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06084: acyl-CoA dehydrogenase	acyl-CoA dehydrogenase
OA2633_06079	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06079: hypothetical protein	hypothetical protein
OA2633_06069	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06069: hypothetical protein	hypothetical protein
OA2633_06064	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_06064: hypothetical protein	hypothetical protein
acdA3	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_17767: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_11351: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_1559: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Silicibacter pomeroyi DSS-3 Gene: SPO0582: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Roseobacter sp. MED193 Gene: MED193_05949: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
SPO2919	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO2919: hypothetical protein	Roseobacter sp. MED193 Gene: MED193_05964: hypothetical protein	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
RB2654_20548	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_20548: hypothetical protein	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	hypothetical protein
HNE_0670	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444 Gene: HNE_0670: hypothetical protein	Oceanicaulis alexandrii HTCC2633	hypothetical protein

CRON 3.
acdA2	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_0361: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Silicibacter pomeroyi DSS-3 Gene: SPO0773: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Roseobacter sp. MED193 Gene: MED193_10206: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	* Hyphomonas neptunium ATCC 15444 Site: position = -88 score = 5.43157 sequence = GTTTACGTCAACGGAAGG Gene: HNE_2706: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Oceanicaulis alexandrii HTCC2633	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

CRON 4.
HNE_2820	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	* Hyphomonas neptunium ATCC 15444 Site: position = -64 score = 5.18713 sequence = GTTGACGTGAACGTCTGG Gene: HNE_2820: oxidoreductase, short chain dehydrogenase/reductase family	Oceanicaulis alexandrii HTCC2633	oxidoreductase, short chain dehydrogenase/reductase family

CRON 5.
eftB	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2550: Electron transfer flavoprotein, beta subunit	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	* Hyphomonas neptunium ATCC 15444 Site: position = -98 score = 5.00765 sequence = CCTCACGTAAGCGTCAAG Gene: HNE_3471: Electron transfer flavoprotein, beta subunit	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_12355: Electron transfer flavoprotein, beta subunit	Electron transfer flavoprotein, beta subunit
etfA	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_2551: Electron transfer flavoprotein, alpha subunit	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444 Gene: HNE_3470: Electron transfer flavoprotein, alpha subunit	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_12350: Electron transfer flavoprotein, alpha subunit	Electron transfer flavoprotein, alpha subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LiuR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --