Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Hyphomonas neptunium ATCC 15444

Properties
Regulator type: Transcription factor
TF locus tag: HNE_0667
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhodobacterales
Statistics of regulated genes:
- Genes 12
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -95
Score: 5.4
Sequence: GTTTACGTGCGCGTCACC
Locus tag: HNE_2094
Name: acdL2
Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: HNE_2093
Name: acdH2
Funciton: Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)
acdL2
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdH2
Pimeloyl-CoA dehydrogenase (Small subunit) (EC 1.3.1.62)

Position: -56
Score: 5.8
Sequence: GCTTACGTGAACGTAAGC
Position: -50
Score: 4.6
Sequence: GTGAACGTAAGCGGCAAC
Locus tag: HNE_0669
Name: acdL
Funciton: acyl-CoA dehydrogenase
Locus tag: HNE_0670
Name: null
Funciton: hypothetical protein
Locus tag: HNE_0671
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: HNE_0672
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
acdL
acyl-CoA dehydrogenase
hypothetical protein
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)

Position: -83
Score: 5.1
Sequence: GTTGACGTGCGCGGAAAG
Locus tag: HNE_0667
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: HNE_0668
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -88
Score: 5.4
Sequence: GTTTACGTCAACGGAAGG
Locus tag: HNE_2706
Name: acdA2
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
acdA2
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -64
Score: 5.2
Sequence: GTTGACGTGAACGTCTGG
Locus tag: HNE_2820
Name: null
Funciton: oxidoreductase, short chain dehydrogenase/reductase family
oxidoreductase, short chain dehydrogenase/reductase family

Position: -98
Score: 5
Sequence: CCTCACGTAAGCGTCAAG
Locus tag: HNE_3471
Name: eftB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: HNE_3470
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
eftB
Electron transfer flavoprotein, beta subunit
etfA
Electron transfer flavoprotein, alpha subunit
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