Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus clausii KSM-K16

Type Regulator Effector Pathway Genes Sites
TF AdaA DNA alkylation response 1 1
TF AraR Arabinose Arabinose utilization 1 1
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 3 5
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 2 3
TF AseR Arsenite Arsenic resistance 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF BkdR Branched-chain amino acid degradation 1 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 61 66
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitR Citrate metabolism 2 2
TF CitT Citrate Citrate utilization 2 6
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 21 26
TF CsoR Copper ion, (Cu+) Copper resistance 3 3
TF CtsR Heat shock Heat shock response 2 2
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 3 4
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF DesR Cold shock response 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 4 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 3 3
TF Fnr Oxygen Anaerobic metabolism 2 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 11 19
TF GamR Glucosamine-6-phosphate Glucosamine utilization 4 6
TF GanR Beta-galactosides Galactan utilization 1 1
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 1
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 1 2
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GlvR2 Maltose-6-phosphate Maltose utilization 2 2
TF GudR Glucarate utilization; Galactarate utilization 3 3
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 3 3
TF IolR 2-deoxy-5-keto-D-gluconate 6-phosphate Inositol utilization 1 1
TF LexA DNA damage SOS response 6 9
TF LicR HPr, phosphocarrier protein; LicB, lichenan-specific enzyme IIB PTS component Beta-glucosides utilization 1 1
TF LutR L-lactate Lactate utilization 1 1
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 1 3
TF MhqR 2-Methylhydroquinone and catechol resistance 3 4
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 1 1
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 2 4
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 4 10
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 7 8
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 3 6
TF RmgR Rhamnogalacturonides utilization 1 1
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 2 4
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 23 40
TF TreR Trehalose-6-phosphate Trehalose utilization 2 2
TF UxuR Aldotetraouronic acid Glucuronate utilization 3 5
TF XylR Xylose Xylose utilization 2 3
TF YbzH Metabolite transport 2 2
TF YdfD/YisV Metabolite transport 2 2
TF YdfF 3 3
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YtlI L-cystine transporter 1 1
TF YybA Polyamine homeostasis 2 3
TF YybR/YdeP Multidrug resistance 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 4
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