Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC2167
Regulated genes 6
Built upon 206 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -43
Score: 4.4
Sequence: AGAAATAAATGTTCGC
Locus tag: ABC1554
ABC1554 -43 4.4 AGAAATAAATGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvA
Ortholog function: holliday junction DNA helicase, subunit A
Anoxybacillus flavithermus WK1 Aflv_0711 -282 4.1 CAGAAGATTCGTTTGA
Bacillus cereus ATCC 14579 BC4415 -85 4 GAGAACATTTGTTGGG
Bacillus clausii KSM-K16 ABC1554 -43 4.4 AGAAATAAATGTTCGC
Position: -64
Score: 4.5
Sequence: CAGAACAAACATTCGT
Locus tag: ABC1989
ABC1989 -64 4.5 CAGAACAAACATTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -76
Score: 4.9
Sequence: TAGAACTTATGTTTGC
Locus tag: ABC2167
ABC2167 -76 4.9 TAGAACTTATGTTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -132
Score: 5.3
Sequence: ACGAATAAATGTTCGT
Locus tag: ABC2199
ABC2199 -132 5.3 ACGAATAAATGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -337
Score: 4.4
Sequence: TAGTACGTATGTTCGT
Locus tag: ABC3059
ABC3059 -337 4.4 TAGTACGTATGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Bacillus subtilis subsp. subtilis str. 168 BSU35170 -93 4.9 CCGAACTTTAGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_032310 -90 5 TCGAACTTTAGTTCGT
Bacillus pumilus SAFR-032 BPUM_3148 -82 4.9 CCGAACTTTAGTTCGT
Bacillus licheniformis DSM 13 BLi03759 -81 4.9 CCGAACTTTAGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2547 -81 5.1 TAGAATATTTGTTCGT
Geobacillus kaustophilus HTA426 GK3086 -85 4.8 ACGAATATGAGTTCGC
Bacillus cereus ATCC 14579 BC5168 -86 4.9 CCGAATATCTGTTCGT
Bacillus halodurans C-125 BH3595 -91 4.9 CAAAACAAACGTTCGT
Bacillus clausii KSM-K16 ABC3059 -337 4.4 TAGTACGTATGTTCGT
Oceanobacillus iheyensis HTE831 OB2488 -70 4.7 ACGAATACTTGTTCGT
Position: -85
Score: 4.1
Sequence: CCGAACGTCTATTCGT
Locus tag: ABC3826
ABC3826 -85 4.1 CCGAACGTCTATTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjW
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168 BSU23710 -57 4.7 ACGAACATACTTTCGC
-29 4.9 GCGAACATAAGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_021830 -28 4.3 CAGAACAAATGTTCCC
Bacillus pumilus SAFR-032 BPUM_2102 -29 4.9 CAGAACATACGTTCTA
Bacillus halodurans C-125 BH2741 -57 4 ACGAACAAATATTCAC
-30 5 CAGAACAAATGTTCTT
Bacillus clausii KSM-K16 ABC3826 -85 4.1 CCGAACGTCTATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3737 -66 4.2 GCGAACATACATTCGG
-37 4.7 ACGAACATACTTTCGC
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