Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: Fur - Bacillales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC1780
Regulated genes 11
Built upon 200 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -29
Score: 6
Sequence: AGTGAGAATGATTTTCATT
Locus tag: ABC0094
ABC0094 -29 6 AGTGAGAATGATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgT
Ortholog function: Thioredoxin reductase (EC 1.8.1.9)
Bacillus pumilus SAFR-032 BPUM_0777 -58 5.8 AATGAGAATCAATATCACT
Bacillus pumilus SAFR-032 BPUM_0777 -64 5.4 TATGATAATGAGAATCAAT
-58 5.8 AATGAGAATCAATATCACT
Bacillus clausii KSM-K16 ABC0094 -29 6 AGTGAGAATGATTTTCATT
-23 5 AATGATTTTCATTATCCTA
Position: -64
Score: 6.4
Sequence: TATGATAATGATTATCAAT
Locus tag: ABC1082
ABC1082 -64 6.4 TATGATAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuB
Ortholog function: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
Bacillus clausii KSM-K16 ABC1082 -64 6.4 TATGATAATGATTATCAAT
Oceanobacillus iheyensis HTE831 OB0452 -163 6 AATGATAATCACTTTCAAT
Position: -63
Score: 6.5
Sequence: ATTGAAAATGATTATCAAT
Position: -57
Score: 6
Sequence: AATGATTATCAATATCATT
Locus tag: ABC1100
ABC1100 -63 6.5 ATTGAAAATGATTATCAAT
-57 6 AATGATTATCAATATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykuN
Ortholog function: Flavodoxin
Bacillus subtilis subsp. subtilis str. 168 BSU14150 -71 6.5 AATGAAAATCATTATCATT
-34 6 ATTGAAAATCATTATCAAC
Bacillus amyloliquefaciens FZB42 RBAM_013920 -70 6.5 AATGAAAATCATTATCATT
-33 6.5 AATGAAAATCATTATCAAT
Bacillus pumilus SAFR-032 BPUM_1312 -75 6.5 AATGAAAATCATTATCATT
-38 6.5 ATTGAAAATGATTATCATT
Bacillus cereus ATCC 14579 BC3541 -48 5.9 ATTGAAATTGATTCTCATT
-21 5.5 AATGAGAATGAGAATCATT
Bacillus clausii KSM-K16 ABC1100 -63 6.5 ATTGAAAATGATTATCAAT
-57 6 AATGATTATCAATATCATT
Position: -102
Score: 4.9
Sequence: AATGATATTCATTTGCAGA
Locus tag: ABC1780
ABC1780 -102 4.9 AATGATATTCATTTGCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Transcriptional regulator for iron transport and metabolism, Fur family
Bacillus amyloliquefaciens FZB42 RBAM_021640 -118 4.8 TTTTAGAATGATTATCACA
Bacillus pumilus SAFR-032 BPUM_2084 -78 4.7 ATTTAAAATGATTATAGTT
Bacillus licheniformis DSM 13 BLi02503 -119 5 ATTTATAATGATTATTAAA
-79 4.9 ATTTATAATGATTATAGTT
Geobacillus kaustophilus HTA426 GK2317 -102 5.3 TATAATAACCATTATCATT
Bacillus cereus ATCC 14579 BC4091 -101 5.8 TTTGAGAATAATTATCAAT
Bacillus halodurans C-125 BH1527 -103 4.7 ACTAATAATAATTATCTGT
-79 5.4 AATAATAATCATTATTAAT
Bacillus clausii KSM-K16 ABC1780 -102 4.9 AATGATATTCATTTGCAGA
Oceanobacillus iheyensis HTE831 OB1849 -96 4.8 TATTATAATTATTATAATT
Paenibacillus sp. JDR-2 Pjdr2_1270 -77 5.1 AATTATAATCATTCTAAAT
Position: -52
Score: 6
Sequence: AATGAGAATCGTTATCAAT
Locus tag: ABC1946
ABC1946 -52 6 AATGAGAATCGTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yetG
Ortholog function: Putative monooxygenase
Bacillus amyloliquefaciens FZB42 RBAM_007300 -47 5.8 TTTGAGAATCATTTTCATT
Bacillus cereus ATCC 14579 BC2969 -65 5.9 ATTGAAAATAATTATCATA
-59 4.8 AATAATTATCATAATCAAC
Bacillus halodurans C-125 BH3883 -54 6 TTTGATAATGATAATCAAT
-48 6 AATGATAATCAATATCAAA
Bacillus clausii KSM-K16 ABC1946 -52 6 AATGAGAATCGTTATCAAT
Position: -42
Score: 5.5
Sequence: ATTGAGAATAAATCTCATT
Locus tag: ABC1947
ABC1947 -42 5.5 ATTGAGAATAAATCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhbC
Ortholog function: Rhizobactin siderophore biosynthesis protein
Bacillus clausii KSM-K16 ABC1947 -42 5.5 ATTGAGAATAAATCTCATT
Position: -68
Score: 6.2
Sequence: ATTGATAATGAGTATCATT
Locus tag: ABC2895
ABC2895 -68 6.2 ATTGATAATGAGTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclN
Ortholog function: Iron compound ABC uptake transporter permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU03800 -98 6.4 AATGATAATGATAATCAAT
-92 4.9 AATGATAATCAATTACTAT
Bacillus amyloliquefaciens FZB42 RBAM_004050 -87 5.9 GTTGATAATGATAATCATT
Bacillus pumilus SAFR-032 BPUM_0984 -57 6.4 ATTGATAATGATAATCATT
Bacillus licheniformis DSM 13 BLi00463 -46 6.4 ATTGATAATGATaATCAtT
Bacillus cereus ATCC 14579 BC5105 -107 6.5 AATGAAAATGATTATCAAT
Bacillus halodurans C-125 BH1025 -71 6.1 AATGATAATGCTTATCATT
-49 6.2 ACTGATAATGATTATCACT
Bacillus clausii KSM-K16 ABC2895 -129 4.5 AGCGAGATTCTTTCTCATT
-68 6.2 ATTGATAATGAGTATCATT
Oceanobacillus iheyensis HTE831 OB0539 -61 5.2 CTTAATAATGATAATCATT
-55 6.5 AATGATAATCATTTTCAAT
Position: -39
Score: 4.9
Sequence: AATGAGAAAGGATTTCATT
Locus tag: ABC2925
ABC2925 -39 4.9 AATGAGAAAGGATTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Ferredoxin--NADP reductase 2
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -36 5.2 ATTAATAACAATTTTCATT
Bacillus amyloliquefaciens FZB42 RBAM_029160 -35 5.2 ATTAATAACAATTTTCAAT
Bacillus pumilus SAFR-032 BPUM_2873 -35 5.6 AGTGATAACAATTTTCATT
Bacillus licheniformis DSM 13 BLi03393 -36 4.9 ATTAAGAACAATTTTCATT
Bacillus clausii KSM-K16 ABC2925 -39 4.9 AATGAGAAAGGATTTCATT
Oceanobacillus iheyensis HTE831 OB2351 -324 5 TATCATTTTCATTATCAAT
Position: -49
Score: 5.8
Sequence: GGTGATAATGATTTTCATT
Locus tag: ABC3476
ABC3476 -49 5.8 GGTGATAATGATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeB
Ortholog function: Fe3+-hydroxamate ABC transporter substrate-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU39610 -55 6.4 ATTGATAATGATAATCATT
Bacillus amyloliquefaciens FZB42 RBAM_036560 -36 6.5 AATGATAATCATTATCACT
Bacillus licheniformis DSM 13 BLi04262 -58 5.6 AATGCGAATCATTATCACT
Bacillus clausii KSM-K16 ABC3476 -49 5.8 GGTGATAATGATTTTCATT
Position: -49
Score: 5.8
Sequence: AGTGATAATCGTTCTCATT
Locus tag: ABC3487
ABC3487 -49 5.8 AGTGATAATCGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feuA
Ortholog function: Fe3+-bacillibactin ABC transporter substrate-binding protein
Bacillus clausii KSM-K16 ABC3487 -49 5.8 AGTGATAATCGTTCTCATT
Position: -37
Score: 6.7
Sequence: ATTGATAATGATTATCAAT
Locus tag: ABC3488
ABC3488 -37 6.7 ATTGATAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: btr
Ortholog function: Transcriptional regulator of Fe-bacillibactin uptake, AraC family
Bacillus subtilis subsp. subtilis str. 168 BSU01640 -47 6.5 ATTGAAAATGATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_002130 -50 5.6 AATGATAACAGTTATCATT
Bacillus pumilus SAFR-032 BPUM_3700 -196 5.6 TTTGATATTGATAATCATT
-190 6.3 ATTGATAATCATTTTCACT
Bacillus clausii KSM-K16 ABC3488 -37 6.7 ATTGATAATGATTATCAAT