Propagation of TnrA regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog:	TnrA - Bacillales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor (activator)
Biological process:	Nitrogen assimilation
Effector:	NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus clausii KSM-K16
Orthologous TF(s)	ABC1760
Regulated genes	23

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Predicted regulatory interactions in *Bacillus clausii KSM-K16*
	Locus tag	Position	Score	Sequence
Position: -139 Score: 5.7 Sequence: TGTCAGATTTTCTGACA Locus tag: ABC0565
	ABC0565	-139	5.7	TGTCAGATTTTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gsiC
Ortholog function: Glutathione transport system permease
Bacillus clausii KSM-K16	ABC0565	-139	5.7	TGTCAGATTTTCTGACA

Position: -8 Score: 3.4 Sequence: GGACAGCAATGATCACA Locus tag: ABC0770
	ABC0770	-8	3.4	GGACAGCAATGATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bacillus subtilis subsp. subtilis str. 168	BSU27430	-28	4	GGTCAAATTTTCTGATA
Bacillus amyloliquefaciens FZB42	RBAM_024530	-123	3.5	TATCAGAAATTACGAAA
Bacillus pumilus SAFR-032	BPUM_2382	-93	3.8	TGTTAAAAATGAATACA
Bacillus clausii KSM-K16	ABC0770	-8	3.4	GGACAGCAATGATCACA
Paenibacillus sp. JDR-2	Pjdr2_2874	-63	4.7	TGTTATCTAACCTAACA

Position: -135 Score: 5.1 Sequence: TGTTAGAAAACATAACA Locus tag: ABC1238
	ABC1238	-135	5.1	TGTTAGAAAACATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Glutathione import ATP-binding protein
Bacillus clausii KSM-K16	ABC1238	-135	5.1	TGTTAGAAAACATAACA

Position: -89 Score: 5.2 Sequence: TGTCACAAAATATTACA Locus tag: ABC1620
	ABC1620	-89	5.2	TGTCACAAAATATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasF
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Bacillus clausii KSM-K16	ABC1620	-89	5.2	TGTCACAAAATATTACA

Position: -99 Score: 5.5 Sequence: TGTTAGATTTTCTTACA Position: -57 Score: 5 Sequence: TGTGATATATTGTTACA Locus tag: ABC1760
	ABC1760	-99	5.5	TGTTAGATTTTCTTACA
		-57	5	TGTGATATATTGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168	BSU13310	-124	3.9	TGTTAATTTTTCTTCCG
		-81	5.5	TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42	RBAM_013130	-124	4.1	TGTCAATTTTTCTGCCG
		-81	4.8	CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032	BPUM_1230	-121	4	TGTCAACTTTCCTTCCA
		-80	5.5	TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13	BLi01490	-124	3.8	TGTAAACTTTTCTTCCG
		-81	5.6	TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1	Aflv_1544	-113	4.9	TGTTACTTTTTATAACA
		-82	4.9	TGTTACTTTTTATAACA
		-27	5.4	TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426	GK1860	-86	3.9	TGTTAATTTTATTTACA
		-33	4.6	CGTTAGAAAATATAACG
Bacillus halodurans C-125	BH1494	-110	5.5	TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16	ABC1760	-99	5.5	TGTTAGATTTTCTTACA
		-57	5	TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831	OB1650	-80	5.1	TGTTAGAAATACTAACA
		-57	4.3	TGACATATAAGCTGACG
Paenibacillus sp. JDR-2	Pjdr2_5154	-302	5.7	TGTTAGATAATCTAACA
		-41	5	TGTTAGAAAACATTACA

Position: -111 Score: 4.2 Sequence: TGTGAGAAAATCTATTA Locus tag: ABC2416
	ABC2416	-111	4.2	TGTGAGAAAATCTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide ABC transporter (ATP-binding protein)
Bacillus subtilis subsp. subtilis str. 168	BSU11360	-119	4.1	TGTAATAATATACAACT
Bacillus amyloliquefaciens FZB42	RBAM_011360	-101	4.1	TGTAATAATATACAACT
Bacillus clausii KSM-K16	ABC2416	-111	4.2	TGTGAGAAAATCTATTA
Oceanobacillus iheyensis HTE831	OB2264	-146	4.4	TGTCGAATTTTGTAACA

Position: -181 Score: 4.8 Sequence: TGACAGAAAATCTTCCA Locus tag: ABC3708
	ABC3708	-181	4.8	TGACAGAAAATCTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrbD
Ortholog function: Sodium/proton-dependent alanine transporter
Bacillus clausii KSM-K16	ABC3708	-181	4.8	TGACAGAAAATCTTCCA

Position: -173 Score: 4.2 Sequence: TGTAAACAATCCTAACA Locus tag: ABC3733
	ABC3733	-173	4.2	TGTAAACAATCCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcD
Ortholog function: Arginine/ornithine antiporter ArcD
Bacillus licheniformis DSM 13	BLi03438	-154	4.6	TGATAGAAAATGTGACG
		-39	4.8	TGTTAAAAAATTTAACA
Bacillus halodurans C-125	BH2308	-260	4.5	TGTCATAAAGCCTAACA
		-71	4.2	TATCAGAAAATATAAAA
Bacillus clausii KSM-K16	ABC3733	-173	4.2	TGTAAACAATCCTAACA
Bacillus clausii KSM-K16	ABC3733	-173	4.2	TGTAAACAATCCTAACA

Position: -270 Score: 4.5 Sequence: TGTGAAAAAACCTTACA Locus tag: ABC3747
	ABC3747	-270	4.5	TGTGAAAAAACCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3747
Ortholog function: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Bacillus clausii KSM-K16	ABC3747	-270	4.5	TGTGAAAAAACCTTACA
		-141	4	GGGGAGAAGATCTAACA
Paenibacillus sp. JDR-2	Pjdr2_6137	-47	5.1	TGTTATCTATTCTAACA

Position: -84 Score: 5.2 Sequence: TGTTAGATATCCTGACA Locus tag: ABC3928
	ABC3928	-84	5.2	TGTTAGATATCCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Anoxybacillus flavithermus WK1	Aflv_1332	-112	4.6	TGTCATGAAAAATAACA
		-49	4.8	TGTAATATATTATAACC
		-27	5	TGTTATAAAAAATGACA
Geobacillus kaustophilus HTA426	GK1452	-124	4.4	TGTTAAGAAATTTAACA
		-48	5.4	TGTTATATATTATGACA
Bacillus halodurans C-125	BH3834	-138	4	TGTCAGATATAGGCACA
		-113	4.9	TGTCTGATTATCTGACA
		-41	4.3	TATTAGAAAAACTTACA
Bacillus clausii KSM-K16	ABC3928	-84	5.2	TGTTAGATATCCTGACA
Paenibacillus sp. JDR-2	Pjdr2_2141	-159	4.2	TGTGAAAAAACTTAACA
		-34	4.5	TGTTAGTAAACATCACA

Position: -103 Score: 5.7 Sequence: TGTCAGATAATCTGACA Locus tag: ABC3940
	ABC3940	-103	5.7	TGTCAGATAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA2
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Anoxybacillus flavithermus WK1	Aflv_1403	-16	4.9	TGTGAGGTAATGTAACA
Geobacillus kaustophilus HTA426	GK1637	-16	4.9	TGTGAGGTAATGTGACA
Bacillus halodurans C-125	BH3867	-103	5.7	TGTCAGATAATCTAACA
		-33	4.9	TGTCACATTACATTACA
Bacillus clausii KSM-K16	ABC3940	-103	5.7	TGTCAGATAATCTGACA

Position: -212 Score: 5.2 Sequence: TGTCAGAGAATCTGACA Locus tag: ABC4033
	ABC4033	-212	5.2	TGTCAGAGAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: codB
Ortholog function: Cytosine/purine/uracil/thiamine/allantoin permease family protein
Bacillus clausii KSM-K16	ABC4033	-321	4.1	CGTAAAGAAATGTAACA
		-212	5.2	TGTCAGAGAATCTGACA

Position: -208 Score: 5.2 Sequence: TGTCAGATTCTCTGACA Locus tag: ABC4034
	ABC4034	-208	5.2	TGTCAGATTCTCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucR
Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family
Bacillus halodurans C-125	BH0757	-191	4.2	TGTGAAGTTTTTTAACA
		-86	4.8	TGTTAAAAATCCTAACA
		31	4.5	TGTTAGATCTTCCAACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TnrA regulog to Bacillus clausii KSM-K16

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --