Propagation of CodY regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog:	CodY - Bacillales
Regulator type:	Transcription factor
Regulator family:	CodY
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus clausii KSM-K16
Orthologous TF(s)	ABC2273
Regulated genes	21

Built upon 445 sites [see more]

Predicted regulatory interactions in *Bacillus clausii KSM-K16*
	Locus tag	Position	Score	Sequence
Position: -208 Score: 4.5 Sequence: AATTTTCGAAAAATA Locus tag: ABC0645
	ABC0645	-208	4.5	AATTTTCGAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gamR
Ortholog function: Predicted transcriptional regulator of glucosamine utilization, GntR family
Bacillus subtilis subsp. subtilis str. 168	BSU02370	-115	4.8	TAATTTCTGAAAATT
Bacillus clausii KSM-K16	ABC0645	-208	4.5	AATTTTCGAAAAATA

Position: -117 Score: 4.5 Sequence: TATTTTTCGAAAATT Locus tag: ABC0646
	ABC0646	-117	4.5	TATTTTTCGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chi
Ortholog function: Chitinase (EC 3.2.1.14)
Bacillus halodurans C-125	BH0916	-125	4.5	TATTTTCTAAAGATT
Bacillus clausii KSM-K16	ABC0646	-117	4.5	TATTTTTCGAAAATT

Position: -295 Score: 4.4 Sequence: AATTATCTAACAAAT Locus tag: ABC1843
	ABC1843	-295	4.4	AATTATCTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bacillus subtilis subsp. subtilis str. 168	BSU23070	-44	4.5	AATTATCAGATATTT
Bacillus amyloliquefaciens FZB42	RBAM_021220	-44	4.5	AATTATCAGATATTT
Bacillus pumilus SAFR-032	BPUM_2039	-45	4.5	AATTATCAGATATTT
Bacillus licheniformis DSM 13	BLi02446	-43	4.5	AATTATCAGATATTT
Anoxybacillus flavithermus WK1	Aflv_1055	-47	4.8	AATTATCAGAAATTT
Geobacillus kaustophilus HTA426	GK2247	-86	4.8	AATTATCAGAAATTT

Position: -101 Score: 4.6 Sequence: TTTTTTCAGAAAATA Locus tag: ABC1961
	ABC1961	-101	4.6	TTTTTTCAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13	BLi03425	-56	5	AATTATTAGAAAATT
Anoxybacillus flavithermus WK1	Aflv_2428	-166	4.5	ATTTTTTAAAATATT
Bacillus cereus ATCC 14579	BC4071	-70	4.5	AATTTATTGATAATT
Bacillus halodurans C-125	BH3439	-240	4.5	AATTTTCGAAAAATA
		-62	5	AATTTTCTGAATATA
Bacillus clausii KSM-K16	ABC1961	-101	4.6	TTTTTTCAGAAAATA

Position: -175 Score: 4.3 Sequence: CTTTTTTAGAAAATT Locus tag: ABC3255
	ABC3255	-175	4.3	CTTTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus halodurans C-125	BH3201	-65	4.3	AATATTCAAAATAAA
Bacillus clausii KSM-K16	ABC3255	-175	4.3	CTTTTTTAGAAAATT

Position: -245 Score: 4.5 Sequence: TATTTTTGGAAAATT Position: -55 Score: 4.5 Sequence: AATAATTTTAAAATT Locus tag: ABC3661
	ABC3661	-245	4.5	TATTTTTGGAAAATT
		-55	4.5	AATAATTTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus halodurans C-125	BH0347	-32	4.3	TATTTTCAAAATAGT
Bacillus clausii KSM-K16	ABC3661	-245	4.5	TATTTTTGGAAAATT
		-55	4.5	AATAATTTTAAAATT

Position: -191 Score: 4.5 Sequence: AAATTTAAAAAAATT Locus tag: ABC3806
	ABC3806	-191	4.5	AAATTTAAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3160
Ortholog function: Hypothetical protein
Bacillus clausii KSM-K16	ABC3806	-191	4.5	AAATTTAAAAAAATT

Position: -164 Score: 4.2 Sequence: TATGTTCTGAAAAAT Position: -77 Score: 4.3 Sequence: AATTTTTAATAAAAT Locus tag: ABC3908
	ABC3908	-164	4.2	TATGTTCTGAAAAAT
		-77	4.3	AATTTTTAATAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltO
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032	BPUM_0421	-252	5	AATTTTCTAAAAATA
		-230	4.4	AATAGTATGAAAATA
Anoxybacillus flavithermus WK1	Aflv_1459	-140	4.9	ATTTTTCTGACAATT
Bacillus cereus ATCC 14579	BC1389	-88	4.6	AAAATTCAGAAAATA
Bacillus halodurans C-125	BH3820	-258	4.4	TATTTTTTGAAAAAA
Bacillus clausii KSM-K16	ABC3908	-77	4.3	AATTTTTAATAAAAT
Oceanobacillus iheyensis HTE831	OB0021	-36	4.9	AATTTTCTGAAAAAA

Position: -122 Score: 4.7 Sequence: TATTATCTGAATATT Locus tag: ABC3940
	ABC3940	-122	4.7	TATTATCTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA2
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Anoxybacillus flavithermus WK1	Aflv_1403	-102	4.4	AAAATACAGAAAATT
Bacillus clausii KSM-K16	ABC3940	-122	4.7	TATTATCTGAATATT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CodY regulog to Bacillus clausii KSM-K16

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --