Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of XylR regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: XylR - Bacillales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC0575
Regulated genes 2
Built upon 28 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -45
Score: 6.3
Sequence: ACTTAGTTTAAATAATAAACAAACC
Locus tag: ABC0572
ABC0572 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus subtilis subsp. subtilis str. 168 BSU17600 -100 6.6 AGTTAGTTTGTTTAAACAACAAACT
Bacillus amyloliquefaciens FZB42 RBAM_017350 -101 6.1 AGTTAGTTTGTTTGGGCAACAAACT
Bacillus pumilus SAFR-032 BPUM_1829 -47 5.9 AGTTTGTTGAATCAACTTACAAAGT
Bacillus licheniformis DSM 13 BLi04048 -69 6.4 AGTTAGTTTAATGGTTAAACAAACA
Geobacillus kaustophilus HTA426 GK1875 -87 6.3 ACTTTGTTTATATGATAGACAAACA
Bacillus halodurans C-125 BH2757 -102 6.7 AGTTTGTCTATTGAATAAACTAAGT
Bacillus clausii KSM-K16 ABC0572 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
Oceanobacillus iheyensis HTE831 OB3119 -44 6.7 ACTTTGTTTGTTAGATAAACAAACA
Paenibacillus sp. JDR-2 Pjdr2_5159 -123 6.7 AGTTTGTTTAATAGACAAACTAAGT
Position: -56
Score: 6.4
Sequence: ACTTAGTTTATTTCATAAACAAACA
Locus tag: ABC3215
ABC3215 -56 6.4 ACTTAGTTTATTTCATAAACAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3215
Ortholog function: Possible alpha-xyloside ABC transporter, substrate-binding component
Bacillus clausii KSM-K16 ABC3215 -56 6.4 ACTTAGTTTATTTCATAAACAAACA
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