Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of YybA regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: YybA - Bacillales
Regulator type: Transcription factor
Regulator family: MarR
Regulation mode: repressor
Biological process: Polyamine homeostasis
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC3242
Regulated genes 2
Built upon 25 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -79
Score: 6.9
Sequence: TTTTTGTTGCATTTTCAACAAAAA
Locus tag: ABC0420
ABC0420 -79 6.9 TTTTTGTTGCATTTTCAACAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC0420
Ortholog function: Multidrug resistance protein, efflux transporter
Bacillus clausii KSM-K16 ABC0420 -79 6.9 TTTTTGTTGCATTTTCAACAAAAA
Position: -90
Score: 6.8
Sequence: TTTTTATTGCAAATACAATAAAAT
Position: -45
Score: 7.2
Sequence: TTTTTGTTGCATTTACAACAAAAA
Locus tag: ABC3242
ABC3242 -90 6.8 TTTTTATTGCAAATACAATAAAAT
-45 7.2 TTTTTGTTGCATTTACAACAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yybA
Ortholog function: Transcriptional regulator, MarR family
Bacillus amyloliquefaciens FZB42 RBAM_037790 -44 6.9 ATTATATTGCATATGCAACAAAAA
Bacillus clausii KSM-K16 ABC3242 -90 6.8 TTTTTATTGCAAATACAATAAAAT
-45 7.2 TTTTTGTTGCATTTACAACAAAAA
Bacillus halodurans C-125 BH3077 -89 7 TTTTTGTTGCATTTACAACAAATT
-42 6.6 TTATTGTTGCATTTGCAATATAAA
Bacillus licheniformis DSM 13 BLi00581 -89 6.8 TTTTTATTGCAAATGCAACAATAT
-42 6.9 ATTATATTGCATTTGCAACAAAAA
Bacillus subtilis subsp. subtilis str. 168 BSU40710 -43 7.2 TTTTTGTTGTAATTGCAACAAAAA
Oceanobacillus iheyensis HTE831 OB1246 -91 7 TTTTTGTTGCAAATACAACATAAT
-43 6.6 TAAATGTTGCATTTGCAACAAAAA
Paenibacillus sp. JDR-2 Pjdr2_5021 -47 6.7 TTATTGTTGTAAATGCAACAAATT
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