Regulog YybA - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	MarR
Regulation mode:	repressor
Biological process:	Polyamine homeostasis
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 25 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - MarR
By pathway - Polyamine homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42	4	4
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16	3	2
Bacillus halodurans C-125	3	2
Bacillus licheniformis DSM 13	4	2
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168	5	3
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831	2	1
Paenibacillus sp. JDR-2	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
yyaT	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -100 score = 6.91734 sequence = TTTTTGTTGCATATGCAATATAAT Gene: RBAM_037800: Putative GCN5-related N-acetyltransferase	Bacillus cereus ATCC 14579 Gene: BC2797: Putative GCN5-related N-acetyltransferase	Bacillus clausii KSM-K16 Gene: ABC1921: Putative GCN5-related N-acetyltransferase	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	2 Bacillus subtilis subsp. subtilis str. 168* Site: position = -100 score = 7.23413 sequence = TTTTTGTTGCAATTACAACAAAAA Gene: BSU40720: Putative GCN5-related N-acetyltransferase Gene: BSU40680: Putative GCN5-related N-acetyltransferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	2 Paenibacillus sp. JDR-2* Site: position = -109 score = 6.65297 sequence = AATTTGTTGCATTTACAACAATAA Gene: Pjdr2_5022: Putative GCN5-related N-acetyltransferase Gene: Pjdr2_1368: Putative GCN5-related N-acetyltransferase	Putative GCN5-related N-acetyltransferase
yyaS	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -46 score = 7.049 sequence = ATTTTGTTGTATTTGCAACATAAA Site: position = -93 score = 6.54195 sequence = TTTTTGTTGTATTTGCAATGAAAA Gene: RBAM_031710: Putative integral inner membrane protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -44 score = 6.96747 sequence = AATTTGTTGTAAATGCAACAAAAA Site: position = -91 score = 6.63724 sequence = TTTATATTGCAAATGCAACAATAA Gene: BH3078: Putative integral inner membrane protein	* Bacillus licheniformis DSM 13 Site: position = -92 score = 6.91734 sequence = TTTTTGTTGCAAATGCAATATAAT Site: position = -45 score = 6.75357 sequence = ATATTGTTGCATTTGCAATAAAAA Gene: BLi00580: Putative integral inner membrane protein	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU40730: Putative integral inner membrane protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative integral inner membrane protein

CRON 2.
ABC0420	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -79 score = 6.87325 sequence = TTTTTGTTGCATTTTCAACAAAAA Gene: ABC0420: Multidrug resistance protein, efflux transporter	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Multidrug resistance protein, efflux transporter

CRON 3.
yybA	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -44 score = 6.91734 sequence = ATTATATTGCATATGCAACAAAAA Gene: RBAM_037790: Transcriptional regulator, MarR family	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -45 score = 7.23413 sequence = TTTTTGTTGCATTTACAACAAAAA Site: position = -90 score = 6.79652 sequence = TTTTTATTGCAAATACAATAAAAT Gene: ABC3242: Transcriptional regulator, MarR family	* Bacillus halodurans C-125 Site: position = -42 score = 6.63724 sequence = TTATTGTTGCATTTGCAATATAAA Site: position = -89 score = 6.96747 sequence = TTTTTGTTGCATTTACAACAAATT Gene: BH3077: Transcriptional regulator, MarR family	* Bacillus licheniformis DSM 13 Site: position = -42 score = 6.91734 sequence = ATTATATTGCATTTGCAACAAAAA Site: position = -89 score = 6.75357 sequence = TTTTTATTGCAAATGCAACAATAT Gene: BLi00581: Transcriptional regulator, MarR family	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -43 score = 7.23413 sequence = TTTTTGTTGTAATTGCAACAAAAA Gene: BSU40710: Transcriptional regulator, MarR family	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -43 score = 6.60659 sequence = TAAATGTTGCATTTGCAACAAAAA Site: position = -91 score = 7.049 sequence = TTTTTGTTGCAAATACAACATAAT Gene: OB1246: Transcriptional regulator, MarR family	* Paenibacillus sp. JDR-2 Site: position = -47 score = 6.65297 sequence = TTATTGTTGTAAATGCAACAAATT Gene: Pjdr2_5021: Transcriptional regulator, MarR family	Transcriptional regulator, MarR family
paiA	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -105 score = 7.049 sequence = TTTATGTTGCAAATACAACAAAAT Site: position = -58 score = 6.54195 sequence = TTTTCATTGCAAATACAACAAAAA Gene: RBAM_031720: N1-spermidine/spermine acetyltransferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3243: N1-spermidine/spermine acetyltransferase	Bacillus halodurans C-125 Gene: BH3076: N1-spermidine/spermine acetyltransferase	Bacillus licheniformis DSM 13 Gene: BLi00582: N1-spermidine/spermine acetyltransferase	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -151 score = 6.96372 sequence = ATTTTATTGCATTTACAACAAAAT Site: position = -199 score = 6.16746 sequence = TTTTTGTTGTAAATACAGCAAAGT Gene: BSU32150: N1-spermidine/spermine acetyltransferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB1247: N1-spermidine/spermine acetyltransferase	Paenibacillus sp. JDR-2	N1-spermidine/spermine acetyltransferase
paiB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi00583: Putative FMN-binding protein	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU32140: Putative FMN-binding protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative FMN-binding protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YybA - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --