Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of YdfF regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: YdfF - Bacillales
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC1174
Regulated genes 3
Built upon 10 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -68
Score: 5.8
Sequence: TTCGATTATAATGGAA
Locus tag: ABC1173
ABC1173 -68 5.8 TTCGATTATAATGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydfE
Ortholog function: Putative flavoprotein
Bacillus clausii KSM-K16 ABC1173 -68 5.8 TTCGATTATAATGGAA
Bacillus halodurans C-125 BH0392 -66 5.7 TTCGATGATAGTTGAA
Bacillus licheniformis DSM 13 BLi03717 -59 5.6 TTCGATGTTAATTGAA
Bacillus subtilis subsp. subtilis str. 168 BSU05380 -66 5.7 TTCGATGATAGTTGAA
Position: -43
Score: 5.8
Sequence: TTCCATTATAATCGAA
Locus tag: ABC1174
ABC1174 -43 5.8 TTCCATTATAATCGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydfF
Ortholog function: Transcriptional regulator, ArsR family
Bacillus clausii KSM-K16 ABC1174 -43 5.8 TTCCATTATAATCGAA
Bacillus halodurans C-125 BH0391 -41 5.7 TTCAACTATCATCGAA
Bacillus licheniformis DSM 13 BLi03718 -45 5.6 TTCAATTAACATCGAA
Bacillus subtilis subsp. subtilis str. 168 BSU05390 -39 5.7 TTCAACTATCATCGAA
Position: -50
Score: 4.9
Sequence: TTCGATGTTGATGGAA
Locus tag: ABC3713
ABC3713 -50 4.9 TTCGATGTTGATGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3713
Ortholog function: Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)
Bacillus clausii KSM-K16 ABC3713 -50 4.9 TTCGATGTTGATGGAA
Bacillus licheniformis DSM 13 BLi00469 -56 5.7 TTCGATGAGCATCGAA
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