Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdfF - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16 3 3
Bacillus halodurans C-125 2 2
Bacillus licheniformis DSM 13 3 3
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168 2 2
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ydfE
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
*
Bacillus clausii KSM-K16

Site:
position = -68
score = 5.79135
sequence = TTCGATTATAATGGAA

Gene: ABC1173: Putative flavoprotein
*
Bacillus halodurans C-125

Site:
position = -66
score = 5.71559
sequence = TTCGATGATAGTTGAA

Gene: BH0392: Putative flavoprotein
*
Bacillus licheniformis DSM 13

Site:
position = -59
score = 5.61068
sequence = TTCGATGTTAATTGAA

Gene: BLi03717: Putative flavoprotein
 
Bacillus pumilus SAFR-032
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -66
score = 5.71559
sequence = TTCGATGATAGTTGAA

Gene: BSU05380: Putative flavoprotein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative flavoprotein
 
CRON 2.
ydfF
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
*
Bacillus clausii KSM-K16

Site:
position = -43
score = 5.79135
sequence = TTCCATTATAATCGAA

Gene: ABC1174: Transcriptional regulator, ArsR family
*
Bacillus halodurans C-125

Site:
position = -41
score = 5.71559
sequence = TTCAACTATCATCGAA

Gene: BH0391: Transcriptional regulator, ArsR family
*
Bacillus licheniformis DSM 13

Site:
position = -45
score = 5.61068
sequence = TTCAATTAACATCGAA

Gene: BLi03718: Transcriptional regulator, ArsR family
 
Bacillus pumilus SAFR-032
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -39
score = 5.71559
sequence = TTCAACTATCATCGAA

Gene: BSU05390: Transcriptional regulator, ArsR family
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator, ArsR family
 
CRON 3.
ABC3713
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
*
Bacillus clausii KSM-K16

Site:
position = -50
score = 4.94138
sequence = TTCGATGTTGATGGAA

Gene: ABC3713: Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -56
score = 5.7368
sequence = TTCGATGAGCATCGAA

Gene: BLi00469: Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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