Regulog YdfF - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - ArsR
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | 3 | 3 |
| Bacillus halodurans C-125 | 2 | 2 |
| Bacillus licheniformis DSM 13 | 3 | 3 |
| Bacillus pumilus SAFR-032 | ||
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 2 |
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ydfE |
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Bacillus clausii KSM-K16 Site: position = -68 score = 5.79135 sequence = TTCGATTATAATGGAA Gene: ABC1173: Putative flavoprotein |
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Bacillus halodurans C-125 Site: position = -66 score = 5.71559 sequence = TTCGATGATAGTTGAA Gene: BH0392: Putative flavoprotein |
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Bacillus licheniformis DSM 13 Site: position = -59 score = 5.61068 sequence = TTCGATGTTAATTGAA Gene: BLi03717: Putative flavoprotein |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -66 score = 5.71559 sequence = TTCGATGATAGTTGAA Gene: BSU05380: Putative flavoprotein |
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Putative flavoprotein |
| CRON 2. | ||||||||||||
| ydfF |
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Bacillus clausii KSM-K16 Site: position = -43 score = 5.79135 sequence = TTCCATTATAATCGAA Gene: ABC1174: Transcriptional regulator, ArsR family |
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Bacillus halodurans C-125 Site: position = -41 score = 5.71559 sequence = TTCAACTATCATCGAA Gene: BH0391: Transcriptional regulator, ArsR family |
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Bacillus licheniformis DSM 13 Site: position = -45 score = 5.61068 sequence = TTCAATTAACATCGAA Gene: BLi03718: Transcriptional regulator, ArsR family |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -39 score = 5.71559 sequence = TTCAACTATCATCGAA Gene: BSU05390: Transcriptional regulator, ArsR family |
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Transcriptional regulator, ArsR family |
| CRON 3. | ||||||||||||
| ABC3713 |
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Bacillus clausii KSM-K16 Site: position = -50 score = 4.94138 sequence = TTCGATGTTGATGGAA Gene: ABC3713: Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) |
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Bacillus licheniformis DSM 13 Site: position = -56 score = 5.7368 sequence = TTCGATGAGCATCGAA Gene: BLi00469: Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) |
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Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |