Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GamR regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: GamR - Bacillales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucosamine utilization
Effector: Glucosamine-6-phosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC0645
Regulated genes 4
Built upon 25 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -73
Score: 5.7
Sequence: TGATTAGTAATTACAAATAT
Locus tag: ABC0643
ABC0643 -73 5.7 TGATTAGTAATTACAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: licH
Ortholog function: Cytoplasmic 6-phospho-beta-glucosidase (EC 3.2.1.86)
Bacillus clausii KSM-K16 ABC0643 -97 5.2 AAATAGGTAGTTACAAATTT
-73 5.7 TGATTAGTAATTACAAATAT
Bacillus halodurans C-125 BH0912 -74 5.6 TGATTAGTAGTAACAAATAT
Bacillus licheniformis DSM 13 BLi00335 -99 6.2 CAATTTGTTATAACAAATAT
-85 4.6 AAATATGTATGGACAAATTT
-71 5.2 AAATTTGTTATAACATGTTA
Oceanobacillus iheyensis HTE831 OB2273 -126 5.8 AATTGTGTTATAACAAATTT
Position: -124
Score: 5.7
Sequence: ATATTTGTAATTACTAATCA
Locus tag: ABC0644
ABC0644 -124 5.7 ATATTTGTAATTACTAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH0913
Ortholog function: Predicted chitooligosaccharide deacetylase
Bacillus clausii KSM-K16 ABC0644 -124 5.7 ATATTTGTAATTACTAATCA
-100 5.2 AAATTTGTAACTACCTATTT
Bacillus halodurans C-125 BH0913 -116 5.6 ATATTTGTTACTACTAATCA
-92 4.8 TTAATTGTAGTTACTTATTT
-60 4.6 TTATACGTAATGACAATTTT
Oceanobacillus iheyensis HTE831 OB2271 -81 5.8 AAATTTGTTATAACACAATT
Position: -60
Score: 4.8
Sequence: GAATTAGTAGTAACAACTTT
Locus tag: ABC0646
ABC0646 -60 4.8 GAATTAGTAGTAACAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chiA
Ortholog function: Chitinase (EC 3.2.1.14)
Bacillus clausii KSM-K16 ABC0646 -60 4.8 GAATTAGTAGTAACAACTTT
Bacillus halodurans C-125 BH0916 -92 5.6 ATATTTGTTATTACATTTAT
-68 4.7 ATTTTAGTAGTAACTTTTAT
-44 5.2 AATATTGTTACTACAAATAA
Bacillus licheniformis DSM 13 BLi00338 -300 6.2 AAATTTGTCATAACAAATTT
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