Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus clausii KSM-K16

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus clausii KSM-K16
Orthologous TF(s) ABC2764
Regulated genes 61
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus clausii KSM-K16
Locus tag Position Score Sequence
Position: -76
Score: 4.8
Sequence: TTGGAAACGGTTACAA
Locus tag: ABC0100
ABC0100 -76 4.8 TTGGAAACGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citMII
Ortholog function: Magnesium citrate secondary transporter
Bacillus clausii KSM-K16 ABC0100 -76 4.8 TTGGAAACGGTTACAA
Bacillus halodurans C-125 BH0745 -56 5 TTGAAAGCGCTTAATA
Bacillus pumilus SAFR-032 BPUM_3618 -120 4.6 ATGAAAGCGGTTGCCT
-32 4.5 ATGTAAACGGTTTATT
Position: -39
Score: 4.7
Sequence: TTGTAAGCGTTTCAAT
Locus tag: ABC0222
ABC0222 -39 4.7 TTGTAAGCGTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dapA
Ortholog function: Dihydrodipicolinate synthase family
Bacillus clausii KSM-K16 ABC0222 -39 4.7 TTGTAAGCGTTTCAAT
Bacillus licheniformis DSM 13 BLi03702 -32 4.9 TTGAAAACGCTTTATA
Position: -112
Score: 4.5
Sequence: AAGAAACCGCTATCAT
Locus tag: ABC0302
ABC0302 -112 4.5 AAGAAACCGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BLi02121
Ortholog function: Predicted transcriptional repressor of the hexuronate utilization operon, PurR family
Bacillus clausii KSM-K16 ABC0302 -197 4.7 ATAAAAACGCTTCCAA
-112 4.5 AAGAAACCGCTATCAT
Oceanobacillus iheyensis HTE831 OB3410 -154 4.4 ATTAAAACGCTTATAA
Position: -106
Score: 4.8
Sequence: TAGTAAACGCTTTCAT
Locus tag: ABC0315
ABC0315 -106 4.8 TAGTAAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuD
Ortholog function: Beta-glucosidase (EC 3.2.1.21)
Bacillus amyloliquefaciens FZB42 RBAM_035900 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0315 -106 4.8 TAGTAAACGCTTTCAT
Bacillus halodurans C-125 BH3918 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02560 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2118 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05840 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1856 -50 4.8 TTGAAAACGATATCAT
Position: -136
Score: 4.9
Sequence: TTGGAAGCGCTTTAAT
Locus tag: ABC0404
ABC0404 -136 4.9 TTGGAAGCGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araL
Ortholog function: Arabinose operon protein AraL
Bacillus amyloliquefaciens FZB42 RBAM_025830 -32 4.4 ATGCAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC0404 -136 4.9 TTGGAAGCGCTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU28770 -38 5 TTGAAAGCGTTTTATT
Position: -35
Score: 5.4
Sequence: TTGAAAGCGTTATCAA
Locus tag: ABC0409
ABC0409 -35 5.4 TTGAAAGCGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Bacillus clausii KSM-K16 ABC0409 -35 5.4 TTGAAAGCGTTATCAA
Bacillus halodurans C-125 BH3442 -64 5 ATGACAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00442 -128 4.8 ATGTAAGCGCTTCAAA
Geobacillus kaustophilus HTA426 GK1910 -129 4.4 TTGAAAACGCTTCAAC
Position: -35
Score: 4.5
Sequence: ATGAAAGCGGTTTACT
Locus tag: ABC0422
ABC0422 -35 4.5 ATGAAAGCGGTTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolA
Ortholog function: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
Bacillus amyloliquefaciens FZB42 RBAM_036780 -177 4.5 ATGTAACCGTTTGCTT
-102 4.8 TTGTAAGCGTTTAATT
67 4.5 ATGAAGACGTTATCAA
Bacillus clausii KSM-K16 ABC0422 -35 4.5 ATGAAAGCGGTTTACT
Bacillus licheniformis DSM 13 BLi04251 -196 4.3 GTGTAAACGTTTTATT
-132 4.8 TTGTAAGCGTTTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU39760 -106 4.9 TTGAAAGCGTTTAATT
Position: -60
Score: 4.9
Sequence: TTGTAAGCGGATTCAT
Locus tag: ABC0481
ABC0481 -60 4.9 TTGTAAGCGGATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuB
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035870 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0481 -60 4.9 TTGTAAGCGGATTCAT
Bacillus halodurans C-125 BH3921 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02564 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2121 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05810 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1859 -50 4.8 TTGAAAACGATATCAT
Oceanobacillus iheyensis HTE831 OB2760 -62 4.8 TTGTAACCGTTTTCTT
Position: 22
Score: 4.2
Sequence: TTGAAAATGTATTAAT
Locus tag: ABC0482
ABC0482 22 4.2 TTGAAAATGTATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuC
Ortholog function: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035890 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0482 -60 4.9 TTGTAAGCGGATTCAT
Bacillus halodurans C-125 BH3919 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02562 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus licheniformis DSM 13 BLi02561 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2119 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05830 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1857 -50 4.8 TTGAAAACGATATCAT
Oceanobacillus iheyensis HTE831 OB2761 -62 4.8 TTGTAACCGTTTTCTT
Position: -37
Score: 5.1
Sequence: ATGAAAGCGGTAACAA
Locus tag: ABC0554
ABC0554 -37 5.1 ATGAAAGCGGTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynB
Ortholog function: Beta-xylosidase (EC 3.2.1.37)
Bacillus amyloliquefaciens FZB42 RBAM_017330 -104 5.1 TTGAAAGCGCTTTTAT
Bacillus clausii KSM-K16 ABC0554 -37 5.1 ATGAAAGCGGTAACAA
Bacillus pumilus SAFR-032 BPUM_1831 -90 5.1 TTGAAAGCGCTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU17580 -99 5.1 TTGAAAGCGCTTTTAT
Position: -72
Score: 4.7
Sequence: TTGACACCGCTTACAA
Locus tag: ABC0572
ABC0572 -72 4.7 TTGACACCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: -52
Score: 4.3
Sequence: CTGTAAGCGGATTCAT
Locus tag: ABC0630
ABC0630 -52 4.3 CTGTAAGCGGATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjmD
Ortholog function: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_017960 0 4.3 ATGAAAGCGGTTCTAG
Bacillus clausii KSM-K16 ABC0630 -52 4.3 CTGTAAGCGGATTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU12330 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: -35
Score: 4.8
Sequence: ATGAAAGGGTTTTCAT
Locus tag: ABC0724
ABC0724 -35 4.8 ATGAAAGGGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH1064
Ortholog function: ABC-type sugar transport system, substrate-binding protein
Bacillus halodurans C-125 BH1064 -114 4.7 ATGTAAGCGATTACTT
Position: -100
Score: 4.5
Sequence: ATGAAAGCGCAATATT
Locus tag: ABC0732
ABC0732 -100 4.5 ATGAAAGCGCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: melA
Ortholog function: Alpha-galactosidase (EC 3.2.1.22)
Bacillus amyloliquefaciens FZB42 RBAM_027220 -91 4.8 TTGAAAACGCTTACTC
Bacillus clausii KSM-K16 ABC0732 -100 4.5 ATGAAAGCGCAATATT
Bacillus licheniformis DSM 13 BLi01143 -51 4.9 ATGAAAGCGCTTTTTA
Bacillus pumilus SAFR-032 BPUM_1750 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30300 -86 4.8 TTGTAACCGCTTACTT
Position: -69
Score: 4.8
Sequence: TTGTAAGTGCTTACAT
Locus tag: ABC0974
ABC0974 -69 4.8 TTGTAAGTGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lctP
Ortholog function: L-lactate permease
Bacillus clausii KSM-K16 ABC0974 -69 4.8 TTGTAAGTGCTTACAT
Bacillus halodurans C-125 BH1831 -70 4.8 TTTAAAACGCTTACAT
Position: 33
Score: 4.5
Sequence: TTTAAAACGTATACAA
Locus tag: ABC0994
ABC0994 33 4.5 TTTAAAACGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Bacillus clausii KSM-K16 ABC0994 33 4.5 TTTAAAACGTATACAA
Bacillus halodurans C-125 BH2166 -48 5.1 TTGAAAGCGTTATCTT
Bacillus licheniformis DSM 13 BLi03829 -75 4.7 TTGAAACCGTTACCAA
Bacillus pumilus SAFR-032 BPUM_3246 -122 4.7 AAGAAAGCGATTTCAA
-64 4.3 TTGAAACCGATACCAA
Bacillus subtilis subsp. subtilis str. 168 BSU22130 -65 4.7 TTGAAACCGTTACCAA
Position: -221
Score: 4.2
Sequence: ATGAAAACGTTGGAAG
Position: -42
Score: 4.2
Sequence: TTGAAACCGTTATACT
Locus tag: ABC1011
ABC1011 -221 4.2 ATGAAAACGTTGGAAG
-42 4.2 TTGAAACCGTTATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citS
Ortholog function: Two-component sensor kinase
Bacillus amyloliquefaciens FZB42 RBAM_007780 1297 4.5 TTGATAACGCTTTCGA
Bacillus cereus ATCC 14579 BC0936 -187 4.9 ATGAAAGCGTGTTCAT
Bacillus clausii KSM-K16 ABC1011 -42 4.2 TTGAAACCGTTATACT
Bacillus halodurans C-125 BH3839 -41 4.8 ATGAAAGCGTTTATTA
Bacillus licheniformis DSM 13 BLi00225 1303 4.5 TTGATAACGCTTTCGA
Bacillus subtilis subsp. subtilis str. 168 BSU07580 1297 4.5 TTGATAACGCTTTCGA
Position: -71
Score: 5.2
Sequence: TTGAAAACGGTTACAT
Locus tag: ABC1013
ABC1013 -71 5.2 TTGAAAACGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tctC
Ortholog function: Tricarboxylate transport protein TctC
Bacillus clausii KSM-K16 ABC1013 -71 5.2 TTGAAAACGGTTACAT
Bacillus licheniformis DSM 13 BLi01241 -33 5.1 ATGAAAGCGATTACAA
Oceanobacillus iheyensis HTE831 OB3249 -71 5.2 TTGAAAACGGTTACAA
Position: -111
Score: 4.8
Sequence: TTGAAAGCGTTTTCCG
Locus tag: ABC1109
ABC1109 -111 4.8 TTGAAAGCGTTTTCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: H+:gluconate symporter
Bacillus clausii KSM-K16 ABC1109 -111 4.8 TTGAAAGCGTTTTCCG
Bacillus licheniformis DSM 13 BLi04288 -81 4.7 ATGAAAGTGTTTGCAT
Bacillus subtilis subsp. subtilis str. 168 BSU40070 -81 4.7 ATGAAAGTGTTTGCAT
Position: 15
Score: 4.5
Sequence: AAGAAAGCGCATTCAG
Locus tag: ABC1135
ABC1135 15 4.5 AAGAAAGCGCATTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplB
Ortholog function: Transmembrane lipoprotein
Bacillus clausii KSM-K16 ABC1135 15 4.5 AAGAAAGCGCATTCAG
Bacillus halodurans C-125 BH1911 15 4.4 GAGAAAGCGCATTCAA
Paenibacillus sp. JDR-2 Pjdr2_1934 0 4.7 ATGAAAGCGGTCACAA
Position: -40
Score: 4.8
Sequence: ATTTAAGCGCTTTCAT
Locus tag: ABC1143
ABC1143 -40 4.8 ATTTAAGCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rmgR
Ortholog function: Transcriptional regulator of rhamnogalacturonan utilization, AraC family
Bacillus clausii KSM-K16 ABC1143 -40 4.8 ATTTAAGCGCTTTCAT
Bacillus clausii KSM-K16 ABC1143 -40 4.8 ATTTAAGCGCTTTCAT
Bacillus halodurans C-125 BH0483 -228 5.1 TTGTAAACGCTATCAT
-36 5.4 TTGAAAGCGCTATCAA
Bacillus halodurans C-125 BH0483 -228 5.1 TTGTAAACGCTATCAT
-36 5.4 TTGAAAGCGCTATCAA
Oceanobacillus iheyensis HTE831 OB2093 -97 5.1 TTGAAAGCGGTATCAT
Oceanobacillus iheyensis HTE831 OB2093 -97 5.1 TTGAAAGCGGTATCAT
Position: -93
Score: 4.4
Sequence: ATTGAAGCGTTATCAT
Position: -30
Score: 4.8
Sequence: TTGAAAACGCTGACAG
Locus tag: ABC1263
ABC1263 -93 4.4 ATTGAAGCGTTATCAT
-30 4.8 TTGAAAACGCTGACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_007970 318 4 GTGAAAACGCTTGCGG
Bacillus cereus ATCC 14579 BC0631 234 4.4 TTGATAACGCTTGCAG
Bacillus halodurans C-125 BH2216 136 4.4 TTGAAAGCCTTGACAT
318 4.4 GTGAAAACGCTTGCTG
Bacillus licheniformis DSM 13 BLi00796 318 4.6 GTGAAAACGCTTGCAG
Bacillus subtilis subsp. subtilis str. 168 BSU07800 318 4.6 GTGAAAACGCTTGCAG
Position: -77
Score: 4.6
Sequence: TTGGTAACGCTTTCAT
Locus tag: ABC1506
ABC1506 -77 4.6 TTGGTAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngJ
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Bacillus clausii KSM-K16 ABC1506 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1130 -105 4.7 TTGGTAGCGCTTACAT
Geobacillus kaustophilus HTA426 GK1597 -103 4.9 TTGAAAACGCTTCAAA
Position: -48
Score: 4.6
Sequence: ATGAAAGGGGTTACAA
Locus tag: ABC1514
ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: 0
Score: 4.3
Sequence: ATGAAAACGCTTTTCG
Locus tag: ABC1730
ABC1730 0 4.3 ATGAAAACGCTTTTCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgQ
Ortholog function: Hypothetical Cytosolic Protein
Anoxybacillus flavithermus WK1 Aflv_0894 -23 4.5 TTGAAAACGCTTATAC
Bacillus cereus ATCC 14579 BC4261 -57 4.3 ATGTGAACGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2216 -49 4.2 CTGAAAGCGCATTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU24860 -79 4.7 TTGTCAGCGTTTTCTT
Position: -63
Score: 4.9
Sequence: ATGTAAGCGCTTTATT
Locus tag: ABC1805
ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: 6
Score: 4.9
Sequence: TTGAAAACGGATACAA
Locus tag: ABC1806
ABC1806 6 4.9 TTGAAAACGGATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgE
Ortholog function: 2-methylcitrate dehydratase (EC 4.2.1.79)
Bacillus amyloliquefaciens FZB42 RBAM_022410 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1806 -63 4.9 ATGTAAGCGCTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU24130 -37 4.9 TTGTAAGCGCTGTCTA
Oceanobacillus iheyensis HTE831 OB2268 -39 4.4 TTGACTGCGCTTTCAA
Position: -70
Score: 4.4
Sequence: TTGTTAGCGTTTTCCT
Locus tag: ABC1890
ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -69
Score: 4.3
Sequence: TGAAAAACGCTTACAT
Locus tag: ABC1926
ABC1926 -69 4.3 TGAAAAACGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntZ
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Bacillus clausii KSM-K16 ABC1926 -69 4.3 TGAAAAACGCTTACAT
Position: -63
Score: 4.8
Sequence: TTGTAAGCGCTTGAAA
Locus tag: ABC2114
ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -98
Score: 4.8
Sequence: ATGAAAACGCATTAAA
Locus tag: ABC2368
ABC2368 -98 4.8 ATGAAAACGCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbA
Ortholog function: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Bacillus amyloliquefaciens FZB42 RBAM_014970 -132 4.9 TTGTAAACGCTTTAAT
Bacillus clausii KSM-K16 ABC2368 -98 4.8 ATGAAAACGCATTAAA
Bacillus licheniformis DSM 13 BLi01728 -150 4.6 TTGTAAACGCTTTTTT
Bacillus pumilus SAFR-032 BPUM_1404 -166 4.8 TTGAAGGCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU15110 -127 4.7 TTGTAAACGCTTTATT
Position: -70
Score: 4.2
Sequence: TTTAATGCGTTTTCAT
Locus tag: ABC2369
ABC2369 -70 4.2 TTTAATGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbP
Ortholog function: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_014960 -46 4.9 ATTAAAGCGTTTACAA
Bacillus clausii KSM-K16 ABC2369 -70 4.2 TTTAATGCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01727 -48 4.5 AAAAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_1403 -58 4.8 ATGAAAACGCCTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU15100 -48 4.4 AATAAAGCGTTTACAA
Oceanobacillus iheyensis HTE831 OB1458 -59 4.3 TAGGAAGCGTTATCTT
Position: -57
Score: 4.5
Sequence: ATGAAAACGGGTACAA
Locus tag: ABC2498
ABC2498 -57 4.5 ATGAAAACGGGTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgW
Ortholog function: Alkaliphily related protein
Bacillus amyloliquefaciens FZB42 RBAM_023130 -61 4.8 ATGAAAACGGTTAAAA
Bacillus clausii KSM-K16 ABC2498 -57 4.5 ATGAAAACGGGTACAA
Bacillus halodurans C-125 BH2819 -168 4.5 AAGAAAACGTTTAAAA
Bacillus licheniformis DSM 13 BLi02654 -66 4.8 ATGAAAACGGTTAAAA
Bacillus pumilus SAFR-032 BPUM_2210 -40 4.8 ATGAAAACGGTTAAAA
Bacillus subtilis subsp. subtilis str. 168 BSU24800 -88 4.8 ATGAAAACGCTATCGA
Position: -98
Score: 4.3
Sequence: TTGTACCCGTTTTCAT
Locus tag: ABC2499
ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgX
Ortholog function: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Bacillus amyloliquefaciens FZB42 RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Bacillus clausii KSM-K16 ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Bacillus halodurans C-125 BH2820 -112 4.5 TTTTAAACGTTTTCTT
Bacillus licheniformis DSM 13 BLi02653 -105 4.4 TTTTAACCGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU24790 -84 4.3 TCGATAGCGTTTTCAT
Position: -76
Score: 4.4
Sequence: AAGAAAGCATTTACAA
Locus tag: ABC2500
ABC2500 -76 4.4 AAGAAAGCATTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgY
Ortholog function: Uncharacterized short membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Bacillus clausii KSM-K16 ABC2500 -76 4.4 AAGAAAGCATTTACAA
Bacillus licheniformis DSM 13 BLi02652 -71 4.8 ATGAAAATGTTTACAT
Bacillus pumilus SAFR-032 BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU24780 -72 4.8 ATGAAAATGTTTACAT
Oceanobacillus iheyensis HTE831 OB1915 -75 4.6 ATAGAAACGTTTACAA
Paenibacillus sp. JDR-2 Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Position: -190
Score: 4.3
Sequence: TTGAATCCGTTTTCTT
Locus tag: ABC2664
ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: -72
Score: 4.9
Sequence: ATGTAAGCGATTACAA
Locus tag: ABC2673
ABC2673 -72 4.9 ATGTAAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfA
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Bacillus clausii KSM-K16 ABC2673 -72 4.9 ATGTAAGCGATTACAA
Bacillus halodurans C-125 BH3103 448 4.9 TTGTAACCGCTATCAA
Position: -56
Score: 4.7
Sequence: ATGGTAGCGTTTTCAT
Locus tag: ABC2686
ABC2686 -56 4.7 ATGGTAGCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcB
Ortholog function: Hypothetical membrane spanning protein
Bacillus clausii KSM-K16 ABC2686 -56 4.7 ATGGTAGCGTTTTCAT
Oceanobacillus iheyensis HTE831 OB2443 13 5.1 TTGAAAGCGATTACAA
Position: -65
Score: 4.7
Sequence: TTGAAAACGTTACCTT
Position: 0
Score: 4.8
Sequence: ATGAAAGCGCTTCCTG
Locus tag: ABC2760
ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -125
Score: 5
Sequence: AAGAAAGCGTTTACAT
Locus tag: ABC3025
ABC3025 -125 5 AAGAAAGCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigL
Ortholog function: DNA-directed RNA polymerase sigma subunit SigL
Anoxybacillus flavithermus WK1 Aflv_2521 211 4.9 ATGTAAGCGTTTTTAA
Bacillus amyloliquefaciens FZB42 RBAM_031510 567 4.5 TGGAAAGCGCTTACAC
Bacillus cereus ATCC 14579 BC5143 488 4.6 ATTGAAGCGCTTACAA
Bacillus clausii KSM-K16 ABC3025 544 4.1 TTGACATCGTTTTAAA
Bacillus halodurans C-125 BH3563 -71 4.4 TCGTAAGCGCTTACAG
Bacillus licheniformis DSM 13 BLi03678 250 4.4 TTAAAAGCGCTTTGAA
Bacillus pumilus SAFR-032 BPUM_3063 951 4.7 ATGAAACCGCTTACGA
Bacillus subtilis subsp. subtilis str. 168 BSU34200 564 4.6 TGGAAAACGCTTTCAG
Geobacillus kaustophilus HTA426 GK3061 96 4.7 TTGGAAGCGTTTTTAT
Position: -61
Score: 4.3
Sequence: TTGCAACCGCTGTCAA
Locus tag: ABC3219
ABC3219 -61 4.3 TTGCAACCGCTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Bacillus clausii KSM-K16 ABC3219 -61 4.3 TTGCAACCGCTGTCAA
Position: -63
Score: 5
Sequence: ATGAAAGCGCATACTT
Locus tag: ABC3348
ABC3348 -63 5 ATGAAAGCGCATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3348
Ortholog function: Predicted galactitol operon regulator (transcriptional antiterminator), BglG family / PTS system, mannitol/fructose-specific IIA component
Bacillus clausii KSM-K16 ABC3348 -63 5 ATGAAAGCGCATACTT
Bacillus halodurans C-125 BH0193 -64 5 ATGAAAGCGCATCCAA
Oceanobacillus iheyensis HTE831 OB2756 -67 5.1 ATGAAAACGTATACAT
Position: -61
Score: 4.7
Sequence: TTGAAAGCGGTGCCAA
Locus tag: ABC3371
ABC3371 -61 4.7 TTGAAAGCGGTGCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xsa
Ortholog function: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
Bacillus amyloliquefaciens FZB42 RBAM_025570 -98 4.4 TGTAAAGCGCTTACAA
Bacillus clausii KSM-K16 ABC3371 -61 4.7 TTGAAAGCGGTGCCAA
Bacillus clausii KSM-K16 ABC3371 -61 4.7 TTGAAAGCGGTGCCAA
Bacillus subtilis subsp. subtilis str. 168 BSU28510 -100 5 TTAAAAGCGCTTACAT
Position: -198
Score: 4.2
Sequence: ATGTATCCGTTTACAA
Locus tag: ABC3383
ABC3383 -198 4.2 ATGTATCCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -37
Score: 4.6
Sequence: AAGAAAGCGGTTACTT
Locus tag: ABC3520
ABC3520 -37 4.6 AAGAAAGCGGTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycB
Ortholog function: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
Bacillus clausii KSM-K16 ABC3520 -37 4.6 AAGAAAGCGGTTACTT
Bacillus halodurans C-125 BH2019 -55 4.4 TATAAAACGCTTTCAT
Bacillus pumilus SAFR-032 BPUM_3613 -51 4.8 AAGAAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU34160 -39 5 TTTAAAGCGCTTTCAT
Position: -33
Score: 4.1
Sequence: CTGTAACCGGTTACAT
Locus tag: ABC3549
ABC3549 -33 4.1 CTGTAACCGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon repressor, LacI family
Anoxybacillus flavithermus WK1 Aflv_2673 -34 4.5 ATGTAACCGGTTACAG
Bacillus clausii KSM-K16 ABC3549 -33 4.1 CTGTAACCGGTTACAT
Position: -106
Score: 4.3
Sequence: AAGGCAGCGCTTTCAA
Locus tag: ABC3579
ABC3579 -106 4.3 AAGGCAGCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glvR
Ortholog function: Transcriptional activator of maltose utilization, RpiR family
Bacillus amyloliquefaciens FZB42 RBAM_008370 -29 4.8 ATGTAAACGTTATCAG
Bacillus clausii KSM-K16 ABC3579 -106 4.3 AAGGCAGCGCTTTCAA
Bacillus licheniformis DSM 13 BLi00856 -29 4.8 TTGTAAACGCTTATAA
Bacillus subtilis subsp. subtilis str. 168 BSU08190 -28 5.1 TTGTAAACGTTATCAA
Position: -54
Score: 4.8
Sequence: TTGAAAGCGCTGCCTT
Locus tag: ABC3580
ABC3580 -54 4.8 TTGAAAGCGCTGCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glvC
Ortholog function: PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_008380 -29 4.8 ATGTAAACGTTATCAG
Bacillus clausii KSM-K16 ABC3580 -54 4.8 TTGAAAGCGCTGCCTT
Bacillus licheniformis DSM 13 BLi00857 -29 4.8 TTGTAAACGCTTATAA
Bacillus subtilis subsp. subtilis str. 168 BSU08200 -28 5.1 TTGTAAACGTTATCAA
Position: -52
Score: 4.3
Sequence: AGGAAAACGTTTTATT
Locus tag: ABC3603
ABC3603 -52 4.3 AGGAAAACGTTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Anoxybacillus flavithermus WK1 Aflv_2672 -34 4.5 ATGTAACCGGTTACAG
Bacillus amyloliquefaciens FZB42 RBAM_033090 -33 5 ATGTAAACGGTTACAT
Bacillus cereus ATCC 14579 BC0660 -35 4.4 CTGTAAACGGTTACAT
Bacillus clausii KSM-K16 ABC3548 -33 4.1 CTGTAACCGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3264 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35920 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2576 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
Position: -210
Score: 4.4
Sequence: ATGAAAGCGTTGACGG
Locus tag: ABC3791
ABC3791 -210 4.4 ATGAAAGCGTTGACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: licT
Ortholog function: Beta-glucoside bgl operon antiterminator, BglG family
Bacillus clausii KSM-K16 ABC3791 -210 4.4 ATGAAAGCGTTGACGG
Position: -143
Score: 4.3
Sequence: TTGAAAACCCTTTCCT
Position: -124
Score: 4.5
Sequence: ATGGAAGCGTAATCTA
Locus tag: ABC3910
ABC3910 -143 4.3 TTGAAAACCCTTTCCT
-124 4.5 ATGGAAGCGTAATCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pta
Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8)
Bacillus amyloliquefaciens FZB42 RBAM_034850 -99 5 TTGAAAGCGCTATAAT
Bacillus clausii KSM-K16 ABC3910 -143 4.3 TTGAAAACCCTTTCCT
-124 4.5 ATGGAAGCGTAATCTA
Bacillus halodurans C-125 BH3823 -194 4.8 TTGGAAACGCTTTAAA
Bacillus licheniformis DSM 13 BLi03997 -104 4.3 GTGTAAACGTTATAAT
Bacillus pumilus SAFR-032 BPUM_3415 -100 4.9 TTGTAAGCGCTATAAT
Bacillus subtilis subsp. subtilis str. 168 BSU37660 -100 5 ATGAAAGCGCTATAAT
-38 4 AAGAAAGCGTTTTTGT
Position: -32
Score: 4.7
Sequence: AAGAAAACGCTTTCAG
Locus tag: ABC3994
ABC3994 -32 4.7 AAGAAAACGCTTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdcS
Ortholog function: Sodium:dicarboxylate cotransporter; di- and tricarboxylate transporters
Bacillus clausii KSM-K16 ABC3994 -32 4.7 AAGAAAACGCTTTCAG
Bacillus licheniformis DSM 13 BLi00488 -41 4.9 TTGTAAGCGCTTTATA
Oceanobacillus iheyensis HTE831 OB2540 -82 4.5 ATGTAAACGCAACCAA
Position: -76
Score: 4.7
Sequence: TTGGTAACGCTTTCAA
Locus tag: ABC4026
ABC4026 -76 4.7 TTGGTAACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atoE
Ortholog function: Short-chain fatty acids transporter
Bacillus clausii KSM-K16 ABC4026 -76 4.7 TTGGTAACGCTTTCAA
Position: -31
Score: 4.3
Sequence: TGTAAAACGCTTTCAT
Locus tag: ABC4048
ABC4048 -31 4.3 TGTAAAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjmC
Ortholog function: (R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272)
Bacillus clausii KSM-K16 ABC4048 -31 4.3 TGTAAAACGCTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU12320 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
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