Regulons of Variovorax paradoxus S110

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	Aave_3430			2	2
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	1	1
TF	CueR	Copper ion, (Cu+)	Copper resistance	3	3
TF	Daci_0595		Metabolite transport	1	1
TF	Daci_3053		Glycolate utilization; Lactate utilization	3	4
TF	Daci_3836			2	1
TF	FadP		Fatty acid degradation	8	4
TF	FdsR	Formate	Formate oxydation	2	2
TF	GabR2	Gamma-aminobutyric acid	Gamma-aminobutyrate utilization	2	1
TF	GguR		Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization	5	4
TF	GntR	Gluconate	Gluconate utilization	3	6
TF	HrcA	Heat shock	Heat shock response	2	2
TF	HutC	cis-Urocanic acid	Histidine utilization	2	3
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	2
TF	LexA	DNA damage	SOS response	8	7
TF	LiuR		Branched-chain amino acid degradation	5	1
TF	MetR	Homocysteine	Methionine biosynthesis	2	4
TF	ModE2	Molybdate	Molybdopterin biosynthesis	2	1
TF	ModE3	Tungsten	Tungsten homeostasis	1	1
TF	NorR	Nitric oxide	Nitrosative stress response	2	5
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	2
TF	NrtR	Adenosine diphosphate ribose	NAD biosynthesis	3	3
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	6	5
TF	PaaR	Phenylacetyl-CoA	Phenylacetic acid degradation	2	3
TF	PdxW	Pyridoxal-5-phosphate	Pyridoxine/pyridoxal homeostasis	1	1
TF	RbsR	Ribose	Ribose utilization	1	1
TF	SdhR		Tricarboxylic acid cycle	3	3
TF	SoxR	Paraquat	Superoxide stress response	3	2
TF	TauR	Taurine	Taurine utilization	2	2
TF	UxuR2		Glucuronate utilization; Galacturonate utilization	11	9
TF	UxuR3		Glucuronate utilization	1	2
TF	VanR	Vanillate	Vanillate utilization	3	2
TF	Vapar_1337			1	1
TF	Vapar_5644			2	1
TF	YdcR			1	1
TF	YrdX			1	4
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	1	1
RNA	SAH_riboswitch	S-adenosylhomocysteine	Methionine metabolism	2	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	4	2

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Variovorax paradoxus S110

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --