Regulon of GguR in Variovorax paradoxus S110

Properties
Regulator type:	Transcription factor
TF locus tag:	Vapar_1727
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Regulog:	GguR - Comamonadaceae
Statistics of regulated genes:
- Genes	15
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - GguR
By TF family - GntR/Others
By pathway - Glucarate utilization
By pathway - Galactarate utilization
By pathway - Galacturonate utilization
By pathway - Glucuronate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -39 Score: 5.1 Sequence: CTGTTGTCGTACAACTA Locus tag: Vapar_1727 Name: gguR Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
	Vapar_1727	gguR	Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Position: -39 Score: 5.1 Sequence: TAGTTGTACGACAACAG Locus tag: Vapar_1726 Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203) Locus tag: Vapar_1725 Name: uxuL1 Funciton: Predicted glucuronolactone/galactarolactone lactonase Locus tag: Vapar_1724 Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component Locus tag: Vapar_1723 Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component Locus tag: Vapar_1722 Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component Locus tag: Vapar_1721 Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42) Locus tag: Vapar_1720 Name: null Funciton: short-chain dehydrogenase/reductase SDR Locus tag: Vapar_1719 Name: null Funciton: hypothetical protein Locus tag: Vapar_1718 Name: uxuF Funciton: Predicted uronate lactonase, PF10282 family Locus tag: Vapar_1717 Name: tctC2 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
	Vapar_1726	udh	Uronate dehydrogenase (EC 1.1.1.203)
	Vapar_1725	uxuL1	Predicted glucuronolactone/galactarolactone lactonase
	Vapar_1724	uxuP	Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
	Vapar_1723	uxuQ	Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
	Vapar_1722	uxuM	Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
	Vapar_1721	garD	D-galactarate dehydratase (EC 4.2.1.42)
	Vapar_1720		short-chain dehydrogenase/reductase SDR
	Vapar_1719		hypothetical protein
	Vapar_1718	uxuF	Predicted uronate lactonase, PF10282 family
	Vapar_1717	tctC2	Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Position: -44 Score: 4.6 Sequence: TAGTTGTACGATGACTG Position: -37 Score: 4.2 Sequence: ACGATGACTGACAACAC Locus tag: Vapar_1728 Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates Locus tag: Vapar_1729 Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) Locus tag: Vapar_1730 Name: null Funciton: hypothetical protein Locus tag: Vapar_1731 Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40)
	Vapar_1728	tctC1	Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
	Vapar_1729	kdgD	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
	Vapar_1730		hypothetical protein
	Vapar_1731	gudD	Glucarate dehydratase (EC 4.2.1.40)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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