Regulog GguR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
- By pathway - Galacturonate utilization
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 11 | 3 |
| Acidovorax sp. JS42 | 10 | 3 |
| Comamonas testosteroni KF-1 | 11 | 3 |
| Delftia acidovorans SPH-1 | 11 | 3 |
| Leptothrix cholodnii SP-6 | 14 | 4 |
| Methylibium petroleiphilum PM1 | 6 | 2 |
| Polaromonas naphthalenivorans CJ2 | 12 | 2 |
| Polaromonas sp. JS666 | 11 | 2 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 15 | 3 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| udh |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -17 score = 5.31837 sequence = GCGTTGTACGACAACAT Gene: Aave_2590: Uronate dehydrogenase (EC 1.1.1.203) |
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*
Leptothrix cholodnii SP-6 Site: position = -95 score = 5.4475 sequence = ACGTTGTACGACAACTG Gene: Lcho_1115: Uronate dehydrogenase (EC 1.1.1.203) |
|
*
Polaromonas naphthalenivorans CJ2 Site: position = -98 score = 4.72113 sequence = GAGTCATCAGACAACGT Gene: Pnap_1591: Uronate dehydrogenase (EC 1.1.1.203) |
*
Polaromonas sp. JS666 Site: position = -97 score = 4.61422 sequence = CAGTCATCAGACAACCT Gene: Bpro_3109: Uronate dehydrogenase (EC 1.1.1.203) |
|
*
Variovorax paradoxus S110 Site: position = -39 score = 5.10689 sequence = TAGTTGTACGACAACAG Gene: Vapar_1726: Uronate dehydrogenase (EC 1.1.1.203) |
|
Uronate dehydrogenase (EC 1.1.1.203) |
| uxuL1 |
Gene: Aave_2591: Predicted glucuronolactone/galactarolactone lactonase |
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Gene: Pnap_1592: Predicted glucuronolactone/galactarolactone lactonase |
Gene: Bpro_3108: Predicted glucuronolactone/galactarolactone lactonase |
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Gene: Vapar_1725: Predicted glucuronolactone/galactarolactone lactonase |
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Predicted glucuronolactone/galactarolactone lactonase |
| uxuP |
Gene: Aave_2592: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
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Gene: Lcho_1114: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
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Gene: Pnap_1593: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
Gene: Bpro_3107: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
|
Gene: Vapar_1724: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
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Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component |
| uxuQ |
Gene: Aave_2593: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
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Gene: Lcho_1113: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
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Gene: Pnap_1594: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
Gene: Bpro_3106: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
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Gene: Vapar_1723: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
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Predicted glucuronate /galacturonate TRAP-type transporter, small permease component |
| uxuM |
Gene: Aave_2594: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
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Gene: Lcho_1112: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
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Gene: Pnap_1595: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
Gene: Bpro_3105: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
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Gene: Vapar_1722: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
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Predicted glucuronate /galacturonate TRAP-type transporter, large permease component |
| kdgD |
Gene: Aave_2587: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: Ajs_1993: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: CtesDRAFT_4121: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: Daci_0251: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
*
Leptothrix cholodnii SP-6 Site: position = -65 score = 5.13193 sequence = ATGTTGTACGATGACAT Site: position = -58 score = 4.38503 sequence = ACGATGACATACAACAT Gene: Lcho_1117: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
|
Gene: Pnap_1596: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
Gene: Bpro_3419: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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Gene: Vapar_1729: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
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5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
| garD |
Gene: Aave_2595: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: Ajs_1998: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: CtesDRAFT_4116: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: Daci_0256: D-galactarate dehydratase (EC 4.2.1.42) |
*
Leptothrix cholodnii SP-6 Site: position = -210 score = 4.82755 sequence = ACGTCATCGTATAACTT Site: position = -66 score = 5.66998 sequence = ATGTTGTACGACAACAT Site: position = -217 score = 4.14048 sequence = TTGTTGTACGTCATCGT Gene: Lcho_2484: D-galactarate dehydratase (EC 4.2.1.42) |
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Gene: Pnap_1597: D-galactarate dehydratase (EC 4.2.1.42) |
Gene: Bpro_3104: D-galactarate dehydratase (EC 4.2.1.42) |
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Gene: Vapar_1721: D-galactarate dehydratase (EC 4.2.1.42) |
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D-galactarate dehydratase (EC 4.2.1.42) |
| kgsD |
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Gene: CtesDRAFT_4125: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Gene: Daci_0247: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Gene: Lcho_1119: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
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Gene: Pnap_1598: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
Gene: Bpro_3422: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
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Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) |
| garL |
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Gene: Lcho_1122: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
Gene: Mpe_A0974: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
Gene: Pnap_1599: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
Gene: Bpro_3103: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
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2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
| garR |
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Gene: Lcho_1123: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: Mpe_A0975: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: Pnap_1600: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: Bpro_3102: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
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Gene: Vapar_3956: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
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2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
| tctC1 |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -38 score = 4.76219 sequence = CAGTTGTATGATGACGT Site: position = -31 score = 4.5835 sequence = ATGATGACGTACAACAT Gene: Aave_2588: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
*
Acidovorax sp. JS42 Site: position = -51 score = 5.08072 sequence = ATGTTGTACGATGACGT Site: position = -44 score = 4.27912 sequence = ACGATGACGTATAACTT Gene: Ajs_1994: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
*
Comamonas testosteroni KF-1 Site: position = -41 score = 4.4101 sequence = TAGTTGTATGATGACTG Gene: CtesDRAFT_4120: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
*
Delftia acidovorans SPH-1 Site: position = -43 score = 5.32743 sequence = CAGTTGTACGACAACTG Gene: Daci_0252: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Lcho_1120: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
*
Methylibium petroleiphilum PM1 Site: position = -77 score = 4.12899 sequence = ACGATGACGTACAACTA Site: position = -84 score = 5.08072 sequence = ATGTTGTACGATGACGT Gene: Mpe_A0972: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Pnap_1601: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Bpro_3101: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
|
*
Variovorax paradoxus S110 Site: position = -44 score = 4.55736 sequence = TAGTTGTACGATGACTG Site: position = -37 score = 4.18418 sequence = ACGATGACTGACAACAC Gene: Vapar_1728: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
| aldE |
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Gene: Bpro_3100: Aldose 1-epimerase (EC 5.1.3.3) |
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Aldose 1-epimerase (EC 5.1.3.3) |
| COG1028 |
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Gene: Vapar_1720: short-chain dehydrogenase/reductase SDR |
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short-chain dehydrogenase/reductase SDR |
| Daci_0982 |
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Gene: Vapar_1719: hypothetical protein |
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hypothetical protein |
| uxuF |
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Gene: Vapar_1718: Predicted uronate lactonase, PF10282 family |
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Predicted uronate lactonase, PF10282 family |
| tctC2 |
Gene: Aave_2597: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Ajs_1997: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: CtesDRAFT_4117: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Daci_0255: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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Gene: Vapar_1717: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
| uxuL2 |
Gene: Aave_2596: Predicted glucuronolactone/galactarolactone lactonase |
Gene: Ajs_1999: Predicted glucuronolactone/galactarolactone lactonase |
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Gene: Daci_0257: Predicted glucuronolactone/galactarolactone lactonase |
Gene: Lcho_1111: Predicted glucuronolactone/galactarolactone lactonase |
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Gene: Vapar_0705: Predicted glucuronolactone/galactarolactone lactonase |
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Predicted glucuronolactone/galactarolactone lactonase |
| tctC3 |
Gene: Aave_3624: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Ajs_1992: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: CtesDRAFT_4122: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
Gene: Daci_0250: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
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Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
| CtesDRAFT_4123 |
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Gene: CtesDRAFT_4123: Uncharacterized protein UPF0065 |
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Uncharacterized protein UPF0065 |
| serA |
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Gene: Ajs_1991: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: CtesDRAFT_4211: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Daci_0249: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Lcho_1121: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: Mpe_A0973: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
| gudD |
Gene: Aave_3623: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Ajs_1990: Glucarate dehydratase (EC 4.2.1.40) |
Gene: CtesDRAFT_4124: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Daci_0248: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Lcho_1118: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Mpe_A0970: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Pnap_1130: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Bpro_3421: Glucarate dehydratase (EC 4.2.1.40) |
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Gene: Vapar_1731: Glucarate dehydratase (EC 4.2.1.40) |
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Glucarate dehydratase (EC 4.2.1.40) |
| garK |
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Gene: Mpe_A0976: D-glycerate 2-kinase (EC 2.7.1.-) |
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D-glycerate 2-kinase (EC 2.7.1.-) |
| gudD2 |
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*
Acidovorax sp. JS42 Site: position = -74 score = 5.32938 sequence = ACGTTATCAGACAACAT Gene: Ajs_1996: Glucarate dehydratase (EC 4.2.1.40) |
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Comamonas testosteroni KF-1 Site: position = -80 score = 5.49871 sequence = CAGTTGTACGACAACAT Gene: CtesDRAFT_4118: Glucarate dehydratase (EC 4.2.1.40) |
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Delftia acidovorans SPH-1 Site: position = -73 score = 5.60729 sequence = AAGTTGTACGACAACGT Gene: Daci_0254: Glucarate dehydratase (EC 4.2.1.40) |
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Glucarate dehydratase (EC 4.2.1.40) |
| Vapar_1730 |
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Gene: Vapar_1730: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||
| gguR |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -38 score = 5.31837 sequence = ATGTTGTCGTACAACGC Gene: Aave_2589: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Acidovorax sp. JS42 Site: position = -39 score = 5.32938 sequence = ATGTTGTCTGATAACGT Gene: Ajs_1995: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Comamonas testosteroni KF-1 Site: position = -38 score = 5.49871 sequence = ATGTTGTCGTACAACTG Gene: CtesDRAFT_4119: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Delftia acidovorans SPH-1 Site: position = -26 score = 5.60729 sequence = ACGTTGTCGTACAACTT Gene: Daci_0253: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Leptothrix cholodnii SP-6 Site: position = -73 score = 5.4475 sequence = CAGTTGTCGTACAACGT Gene: Lcho_1116: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Methylibium petroleiphilum PM1 Site: position = -67 score = 4.89293 sequence = CGGTTGTCATACAACTG Gene: Mpe_A0971: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Polaromonas naphthalenivorans CJ2 Site: position = -58 score = 4.72113 sequence = ACGTTGTCTGATGACTC Gene: Pnap_1590: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
*
Polaromonas sp. JS666 Site: position = -59 score = 4.61422 sequence = AGGTTGTCTGATGACTG Gene: Bpro_3110: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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*
Variovorax paradoxus S110 Site: position = -39 score = 5.10689 sequence = CTGTTGTCGTACAACTA Gene: Vapar_1727: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
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Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |