Regulon of GguR in Leptothrix cholodnii SP-6

Properties
Regulator type:	Transcription factor
TF locus tag:	Lcho_1116
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization
Effector:
Regulog:	GguR - Comamonadaceae
Statistics of regulated genes:
- Genes	14
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - GguR
By TF family - GntR/Others
By pathway - Glucarate utilization
By pathway - Galactarate utilization
By pathway - Galacturonate utilization
By pathway - Glucuronate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -73 Score: 5.4 Sequence: CAGTTGTCGTACAACGT Locus tag: Lcho_1116 Name: gguR Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family
	Lcho_1116	gguR	Predicted D-glucarate or D-galactorate utilization regulator, GntR family
Position: -95 Score: 5.4 Sequence: ACGTTGTACGACAACTG Locus tag: Lcho_1115 Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203) Locus tag: Lcho_1114 Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component Locus tag: Lcho_1113 Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component Locus tag: Lcho_1112 Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component Locus tag: Lcho_1111 Name: uxuL2 Funciton: Predicted glucuronolactone/galactarolactone lactonase
	Lcho_1115	udh	Uronate dehydrogenase (EC 1.1.1.203)
	Lcho_1114	uxuP	Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
	Lcho_1113	uxuQ	Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
	Lcho_1112	uxuM	Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
	Lcho_1111	uxuL2	Predicted glucuronolactone/galactarolactone lactonase
Position: -65 Score: 5.1 Sequence: ATGTTGTACGATGACAT Position: -58 Score: 4.4 Sequence: ACGATGACATACAACAT Locus tag: Lcho_1117 Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) Locus tag: Lcho_1118 Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40) Locus tag: Lcho_1119 Name: kgsD Funciton: Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) Locus tag: Lcho_1120 Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates Locus tag: Lcho_1121 Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) Locus tag: Lcho_1122 Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) Locus tag: Lcho_1123 Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
	Lcho_1117	kdgD	5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
	Lcho_1118	gudD	Glucarate dehydratase (EC 4.2.1.40)
	Lcho_1119	kgsD	Alpha-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
	Lcho_1120	tctC1	Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
	Lcho_1121	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
	Lcho_1122	garL	2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
	Lcho_1123	garR	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Position: -217 Score: 4.1 Sequence: TTGTTGTACGTCATCGT Position: -210 Score: 4.8 Sequence: ACGTCATCGTATAACTT Position: -66 Score: 5.7 Sequence: ATGTTGTACGACAACAT Locus tag: Lcho_2484 Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42)
	Lcho_2484	garD	D-galactarate dehydratase (EC 4.2.1.42)

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD