Regulon of GguR in Acidovorax avenae subsp. citrulli AAC00-1
| Regulator type: | Transcription factor |
| TF locus tag: | Aave_2589 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization |
| Effector: | |
| Regulog: | GguR - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - GguR
- By TF family - GntR/Others
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
- By pathway - Galacturonate utilization
- By pathway - Glucuronate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -38
Score: 5.3 Sequence: ATGTTGTCGTACAACGC
Locus tag: Aave_2589
Name: gguR Funciton: Predicted D-glucarate or D-galactorate utilization regulator, GntR family |
|||
|
gguR
|
Predicted D-glucarate or D-galactorate utilization regulator, GntR family
|
||
|
Position: -17
Score: 5.3 Sequence: GCGTTGTACGACAACAT
Locus tag: Aave_2590
Name: udh Funciton: Uronate dehydrogenase (EC 1.1.1.203)
Locus tag: Aave_2591
Name: uxuL1 Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Aave_2592
Name: uxuP Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
Locus tag: Aave_2593
Name: uxuQ Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
Locus tag: Aave_2594
Name: uxuM Funciton: Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
Locus tag: Aave_2595
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42)
Locus tag: Aave_2596
Name: uxuL2 Funciton: Predicted glucuronolactone/galactarolactone lactonase
Locus tag: Aave_2597
Name: tctC2 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates |
|||
|
udh
|
Uronate dehydrogenase (EC 1.1.1.203)
|
||
|
uxuL1
|
Predicted glucuronolactone/galactarolactone lactonase
|
||
|
uxuP
|
Predicted glucuronate /galacturonate TRAP-type transporter, periplasmic component
|
||
|
uxuQ
|
Predicted glucuronate /galacturonate TRAP-type transporter, small permease component
|
||
|
uxuM
|
Predicted glucuronate /galacturonate TRAP-type transporter, large permease component
|
||
|
garD
|
D-galactarate dehydratase (EC 4.2.1.42)
|
||
|
uxuL2
|
Predicted glucuronolactone/galactarolactone lactonase
|
||
|
tctC2
|
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
|
||
|
Position: -38
Score: 4.8 Sequence: CAGTTGTATGATGACGT
Position: -31
Score: 4.6 Sequence: ATGATGACGTACAACAT
Locus tag: Aave_2588
Name: tctC1 Funciton: Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
Locus tag: Aave_2587
Name: kdgD Funciton: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) |
|||
|
tctC1
|
Tripartite tricarboxylate transporter family receptor, putative transporter for uronates
|
||
|
kdgD
|
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |