Regulon of LexA in Variovorax paradoxus S110
| Regulator type: | Transcription factor |
| TF locus tag: | Vapar_2636 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -55
Score: 5.9 Sequence: AACTGGTTAAAAATACAGGT
Position: -36
Score: 4.9 Sequence: TACTGGATATTCAGCCAGTG
Locus tag: Vapar_2636
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -26
Score: 5 Sequence: TACTGTTGTTTTATACAGCA
Locus tag: Vapar_2806
Name: PF06733 Funciton: DinG family ATP-dependent helicase CPE1197 |
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PF06733
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DinG family ATP-dependent helicase CPE1197
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Position: -32
Score: 6.4 Sequence: TACTGTATAAAAATACAGTT
Locus tag: Vapar_3206
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: Vapar_3205
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: Vapar_3204
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Locus tag: Vapar_3203
Name: Aave_0184 Funciton: Conserved hypothetical protein |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Aave_0184
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Conserved hypothetical protein
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Position: -32
Score: 5.5 Sequence: TACTGTTCATCCATACAGTA
Locus tag: Vapar_4538
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: Vapar_4537
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: Vapar_4536
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -40
Score: 5.9 Sequence: TACTGTGTAAACATACAGTA
Locus tag: Vapar_1693
Name: PF04055 Funciton: DNA repair photolyase |
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PF04055
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DNA repair photolyase
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Position: -83
Score: 4.3 Sequence: TACTGTTCAAGCATCCAGCC
Locus tag: Vapar_5195
Name: recA Funciton: Recombinase A
Locus tag: Vapar_5194
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |