Regulon of NtrC in Variovorax paradoxus S110

Properties
Regulator type:	Transcription factor
TF locus tag:	Vapar_1635
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes	14
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -139 Score: 5.7 Sequence: TGCACCAATTTGGTGAT Locus tag: Vapar_1632 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) Locus tag: Vapar_1633 Name: ntrZ Funciton: Conserved hypothetical signal peptide protein Locus tag: Vapar_1634 Name: ntrB Funciton: putative nitrogen regulation protein NR(II) Locus tag: Vapar_1635 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Vapar_1632	glnA	Glutamine synthetase type I (EC 6.3.1.2)
	Vapar_1633	ntrZ	Conserved hypothetical signal peptide protein
	Vapar_1634	ntrB	putative nitrogen regulation protein NR(II)
	Vapar_1635	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -166 Score: 4.6 Sequence: AGCACCGCTTTGGTGAG Locus tag: Vapar_3526 Name: narK Funciton: Nitrate/nitrite antiporter
	Vapar_3526	narK	Nitrate/nitrite antiporter
Position: -313 Score: 4.3 Sequence: CGCACAACAAGCGTGCA Locus tag: Vapar_3522 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: Vapar_3523 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: Vapar_3524 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component
	Vapar_3522	nrtA	Nitrate ABC transporter, substrate-binding component
	Vapar_3523	nrtB	Nitrate ABC transporter, permease component
	Vapar_3524	nrtC	Nitrate ABC transporter, ATP-binding component
Position: -189 Score: 4.6 Sequence: AGCACTGTTTTGGTGAG Locus tag: Vapar_2849 Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4) Locus tag: Vapar_2848 Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4) Locus tag: Vapar_2847 Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
	Vapar_2849	nasD	Nitrite reductase, large subunit (EC 1.7.1.4)
	Vapar_2848	nasE	Nitrite reductase, small subunit (EC 1.7.1.4)
	Vapar_2847	cysG	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -207 Score: 4.9 Sequence: CTCACCATTGTGGTGCG Locus tag: Vapar_0217 Name: CHP02001 Funciton: Conserved hypothetical protein CHP02001 Locus tag: Vapar_0218 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Vapar_0219 Name: amtB Funciton: Ammonium transporter
	Vapar_0217	CHP02001	Conserved hypothetical protein CHP02001
	Vapar_0218	glnK	Nitrogen regulatory protein P-II
	Vapar_0219	amtB	Ammonium transporter

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD