Regulog NtrC - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 11 | 4 |
| Acidovorax sp. JS42 | 14 | 5 |
| Comamonas testosteroni KF-1 | 11 | 4 |
| Delftia acidovorans SPH-1 | 14 | 4 |
| Polaromonas naphthalenivorans CJ2 | 10 | 3 |
| Polaromonas sp. JS666 | 8 | 3 |
| Rhodoferax ferrireducens DSM 15236 | 11 | 3 |
| Variovorax paradoxus S110 | 14 | 5 |
| Verminephrobacter eiseniae EF01-2 | 7 | 2 |
| Methylibium petroleiphilum PM1 | 4 | 1 |
| Leptothrix cholodnii SP-6 | 9 | 3 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| CHP02001 |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -180 score = 5.07315 sequence = CGCACCATTCGGGTGCG Site: position = -108 score = 4.63201 sequence = CGCACCCATTCGGAGCG Gene: Aave_0232: Conserved hypothetical protein CHP02001 |
*
Acidovorax sp. JS42 Site: position = -155 score = 5.04813 sequence = TGCACCAGGCTGGTGCG Gene: Ajs_0162: Conserved hypothetical protein CHP02001 |
*
Comamonas testosteroni KF-1 Site: position = -288 score = 4.88187 sequence = ATCACCTGTTTGGTGCA Site: position = -228 score = 5.5534 sequence = CGCACCATCTTGGTGCA Gene: CtesDRAFT_4075: Conserved hypothetical protein CHP02001 |
*
Delftia acidovorans SPH-1 Site: position = -208 score = 5.44106 sequence = TGCACTATCTTGGTGCA Site: position = -136 score = 4.72602 sequence = TGCACAAAGCCGGTGCA Gene: Daci_0301: Conserved hypothetical protein CHP02001 |
|
*
Polaromonas sp. JS666 Site: position = -153 score = 5.45531 sequence = TGCGCCAACTTGGTGCA Gene: Bpro_0182: Conserved hypothetical protein CHP02001 |
|
*
Variovorax paradoxus S110 Site: position = -207 score = 4.86106 sequence = CTCACCATTGTGGTGCG Gene: Vapar_0217: Conserved hypothetical protein CHP02001 |
*
Verminephrobacter eiseniae EF01-2 Site: position = -202 score = 4.36901 sequence = CTCCCCGAATGGGTGCG Gene: Veis_3315: Conserved hypothetical protein CHP02001 |
|
|
Conserved hypothetical protein CHP02001 |
| glnK |
Gene: Aave_0233: Nitrogen regulatory protein P-II |
Gene: Ajs_0163: Nitrogen regulatory protein P-II |
Gene: CtesDRAFT_4074: Nitrogen regulatory protein P-II |
Gene: Daci_0302: Nitrogen regulatory protein P-II |
*
Polaromonas naphthalenivorans CJ2 Site: position = -319 score = 4.68625 sequence = TGCATCAAAGTTGTGCA Site: position = -295 score = 4.54282 sequence = TGCATCATGATGGTGCG Gene: Pnap_0120: Nitrogen regulatory protein P-II |
Gene: Bpro_0183: Nitrogen regulatory protein P-II |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -203 score = 4.95303 sequence = TGCACCAAGTATGTGCG Gene: Rfer_0472: Nitrogen regulatory protein P-II |
Gene: Vapar_0218: Nitrogen regulatory protein P-II |
Gene: Veis_3314: Nitrogen regulatory protein P-II |
Gene: Mpe_A0171: Nitrogen regulatory protein P-II |
*2
Leptothrix cholodnii SP-6 Site: position = -193 score = 5.27882 sequence = TGCACTGAATTGGTGCC Gene: Lcho_3942: Nitrogen regulatory protein P-II Gene: Lcho_0156: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| amtB |
|
Gene: Ajs_0164: Ammonium transporter |
Gene: CtesDRAFT_4073: Ammonium transporter |
Gene: Daci_0303: Ammonium transporter |
Gene: Pnap_0121: Ammonium transporter |
Gene: Bpro_0184: Ammonium transporter |
Gene: Rfer_0473: Ammonium transporter |
Gene: Vapar_0219: Ammonium transporter |
Gene: Veis_3313: Ammonium transporter |
Gene: Mpe_A0172: Ammonium transporter |
2
Leptothrix cholodnii SP-6 Gene: Lcho_3941: Ammonium transporter Gene: Lcho_0157: Ammonium transporter |
Ammonium transporter |
| CRON 2. | ||||||||||||
| glnA |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -207 score = 5.56221 sequence = TGCACGATTTTGGTGCG Site: position = -184 score = 4.85358 sequence = GGCCCCGAATTGGTGCG Gene: Aave_1442: Glutamine synthetase type I (EC 6.3.1.2) |
*
Acidovorax sp. JS42 Site: position = -134 score = 5.12206 sequence = TGCACGCGTTTGGTGCG Site: position = -206 score = 5.67622 sequence = TGCACCAAACGGGTGCA Gene: Ajs_1189: Glutamine synthetase type I (EC 6.3.1.2) |
*
Comamonas testosteroni KF-1 Site: position = -238 score = 4.73691 sequence = TTCGCCAAGATGGTGCA Site: position = -261 score = 5.90661 sequence = TGCACCACATTGGTGCA Gene: CtesDRAFT_0725: Glutamine synthetase type I (EC 6.3.1.2) |
*
Delftia acidovorans SPH-1 Site: position = -84 score = 4.73075 sequence = TGCACTCAATGGATGCA Site: position = -286 score = 5.7909 sequence = TGCACTCATTTGGTGCA Site: position = -214 score = 5.55922 sequence = TGCACCGATTTGGTGAA Gene: Daci_5002: Glutamine synthetase type I (EC 6.3.1.2) |
*
Polaromonas naphthalenivorans CJ2 Site: position = -250 score = 4.57766 sequence = GGCCCTGAATTGGTGCG Site: position = -200 score = 4.99954 sequence = CGCACTTTTTTGGTGCT Gene: Pnap_2780: Glutamine synthetase type I (EC 6.3.1.2) |
*
Polaromonas sp. JS666 Site: position = -216 score = 5.5788 sequence = TGCGCTAAATTGGTGCA Site: position = -242 score = 4.85358 sequence = GGCCCCGAATTGGTGCG Gene: Bpro_1807: Glutamine synthetase type I (EC 6.3.1.2) |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -184 score = 5.27545 sequence = CGCACTTAATTGGTGCT Site: position = -236 score = 4.74124 sequence = GGCCCTGAATTGGTGCA Gene: Rfer_2979: Glutamine synthetase type I (EC 6.3.1.2) |
*
Variovorax paradoxus S110 Site: position = -139 score = 5.66305 sequence = TGCACCAATTTGGTGAT Gene: Vapar_1632: Glutamine synthetase type I (EC 6.3.1.2) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -219 score = 5.13864 sequence = TGCACGCATTTGGCGCA Site: position = -196 score = 4.85358 sequence = GGCCCCGAATTGGTGCG Gene: Veis_3154: Glutamine synthetase type I (EC 6.3.1.2) |
*
Methylibium petroleiphilum PM1 Site: position = -244 score = 4.57766 sequence = GGCCCCGAAATGGTGCG Gene: Mpe_A2076: Glutamine synthetase type I (EC 6.3.1.2) |
*
Leptothrix cholodnii SP-6 Site: position = -178 score = 5.06771 sequence = CGCACCATGTTTGTGCA Site: position = -225 score = 4.57766 sequence = GGCCCCGAAATGGTGCG Gene: Lcho_3581: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| ntrZ |
Gene: Aave_1443: Conserved hypothetical signal peptide protein |
Gene: Ajs_1190: Conserved hypothetical signal peptide protein |
Gene: CtesDRAFT_0726: Conserved hypothetical signal peptide protein |
Gene: Daci_5001: Conserved hypothetical signal peptide protein |
Gene: Pnap_2779: Conserved hypothetical signal peptide protein |
Gene: Bpro_1808: Conserved hypothetical signal peptide protein |
Gene: Rfer_2980: Conserved hypothetical signal peptide protein |
Gene: Vapar_1633: Conserved hypothetical signal peptide protein |
Gene: Veis_3153: Conserved hypothetical signal peptide protein |
Gene: Mpe_A2075: Conserved hypothetical signal peptide protein |
Gene: Lcho_3582: Conserved hypothetical signal peptide protein |
Conserved hypothetical signal peptide protein |
| ntrB |
Gene: Aave_1444: putative nitrogen regulation protein NR(II) |
Gene: Ajs_1191: putative nitrogen regulation protein NR(II) |
Gene: CtesDRAFT_0727: putative nitrogen regulation protein NR(II) |
Gene: Daci_5000: putative nitrogen regulation protein NR(II) |
Gene: Pnap_2778: putative nitrogen regulation protein NR(II) |
Gene: Bpro_1809: putative nitrogen regulation protein NR(II) |
Gene: Rfer_2981: putative nitrogen regulation protein NR(II) |
Gene: Vapar_1634: putative nitrogen regulation protein NR(II) |
Gene: Veis_3152: putative nitrogen regulation protein NR(II) |
Gene: Mpe_A2074: putative nitrogen regulation protein NR(II) |
Gene: Lcho_3583: putative nitrogen regulation protein NR(II) |
putative nitrogen regulation protein NR(II) |
| ntrC |
Gene: Aave_1445: Nitrogen regulation protein NR(I), Fis family |
Gene: Ajs_1192: Nitrogen regulation protein NR(I), Fis family |
Gene: CtesDRAFT_0728: Nitrogen regulation protein NR(I), Fis family |
Gene: Daci_4999: Nitrogen regulation protein NR(I), Fis family |
Gene: Pnap_2777: Nitrogen regulation protein NR(I), Fis family |
Gene: Bpro_1810: Nitrogen regulation protein NR(I), Fis family |
Gene: Rfer_2982: Nitrogen regulation protein NR(I), Fis family |
Gene: Vapar_1635: Nitrogen regulation protein NR(I), Fis family |
Gene: Veis_3151: Nitrogen regulation protein NR(I), Fis family |
Gene: Mpe_A2073: Nitrogen regulation protein NR(I), Fis family |
Gene: Lcho_3584: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 3. | ||||||||||||
| nrtA |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -282 score = 4.83733 sequence = CGCACGAAGAGGGTGCA Gene: Aave_2147: Nitrate ABC transporter, substrate-binding component |
*
Acidovorax sp. JS42 Site: position = -314 score = 5.03033 sequence = TGCACAAATGCGGTGCA Gene: Ajs_2831: Nitrate ABC transporter, substrate-binding component |
*
Comamonas testosteroni KF-1 Site: position = -232 score = 4.53147 sequence = TGCACCAAATATGGGCC Gene: CtesDRAFT_4523: Nitrate ABC transporter, substrate-binding component |
*
Delftia acidovorans SPH-1 Site: position = -277 score = 4.86857 sequence = AGCACCGACTTGGTGCC Gene: Daci_2377: Nitrate ABC transporter, substrate-binding component |
*
Polaromonas naphthalenivorans CJ2 Site: position = -334 score = 4.74124 sequence = GGCGCCGAAATGGTGCA Gene: Pnap_1414: Nitrate ABC transporter, substrate-binding component |
Gene: Bpro_3267: Nitrate ABC transporter, substrate-binding component |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -315 score = 5.06905 sequence = TGCACAAAACTGGTGCC Gene: Rfer_2554: Nitrate ABC transporter, substrate-binding component |
*
Variovorax paradoxus S110 Site: position = -313 score = 4.26536 sequence = CGCACAACAAGCGTGCA Gene: Vapar_3522: Nitrate ABC transporter, substrate-binding component |
Gene: Veis_2590: Nitrate ABC transporter, substrate-binding component |
Gene: Mpe_A1392: Nitrate ABC transporter, substrate-binding component |
*
Leptothrix cholodnii SP-6 Site: position = -300 score = 4.35164 sequence = TGCACGCCCATGGTGCG Gene: Lcho_3843: Nitrate ABC transporter, substrate-binding component |
Nitrate ABC transporter, substrate-binding component |
| nrtB |
Gene: Aave_2146: Nitrate ABC transporter, permease component |
Gene: Ajs_2832: Nitrate ABC transporter, permease component |
Gene: CtesDRAFT_4524: Nitrate ABC transporter, permease component |
Gene: Daci_2376: Nitrate ABC transporter, permease component |
Gene: Pnap_1413: Nitrate ABC transporter, permease component |
Gene: Bpro_3268: Nitrate ABC transporter, permease component |
Gene: Rfer_2555: Nitrate ABC transporter, permease component |
Gene: Vapar_3523: Nitrate ABC transporter, permease component |
Gene: Veis_2591: Nitrate ABC transporter, permease component |
Gene: Mpe_A1391: Nitrate ABC transporter, permease component |
Gene: Lcho_3842: Nitrate ABC transporter, permease component |
Nitrate ABC transporter, permease component |
| nrtC |
Gene: Aave_2145: Nitrate ABC transporter, ATP-binding component |
Gene: Ajs_2833: Nitrate ABC transporter, ATP-binding component |
Gene: CtesDRAFT_4525: Nitrate ABC transporter, ATP-binding component |
Gene: Daci_2375: Nitrate ABC transporter, ATP-binding component |
Gene: Pnap_1412: Nitrate ABC transporter, ATP-binding component |
Gene: Bpro_3269: Nitrate ABC transporter, ATP-binding component |
Gene: Rfer_2556: Nitrate ABC transporter, ATP-binding component |
Gene: Vapar_3524: Nitrate ABC transporter, ATP-binding component |
Gene: Veis_2592: Nitrate ABC transporter, ATP-binding component |
Gene: Mpe_A1390: Nitrate ABC transporter, ATP-binding component |
Gene: Lcho_3841: Nitrate ABC transporter, ATP-binding component |
Nitrate ABC transporter, ATP-binding component |
| nasD |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -331 score = 4.39075 sequence = TGCACCGAAGCGGTTCA Gene: Aave_2107: Nitrite reductase, large subunit (EC 1.7.1.4) |
*
Acidovorax sp. JS42 Site: position = -328 score = 4.46735 sequence = TGCACCACGGCGGTGCG Gene: Ajs_2839: Nitrite reductase, large subunit (EC 1.7.1.4) |
*
Comamonas testosteroni KF-1 Site: position = -219 score = 4.75442 sequence = TGCACAAAAGCAGTGCA Gene: CtesDRAFT_4526: Nitrite reductase, large subunit (EC 1.7.1.4) |
*
Delftia acidovorans SPH-1 Site: position = -252 score = 4.61777 sequence = CGCACCGCTTTGATGCA Gene: Daci_2371: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Pnap_1407: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Bpro_3276: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Rfer_2557: Nitrite reductase, large subunit (EC 1.7.1.4) |
*2
Variovorax paradoxus S110 Site: position = -189 score = 4.55706 sequence = AGCACTGTTTTGGTGAG Gene: Vapar_2849: Nitrite reductase, large subunit (EC 1.7.1.4) Gene: Vapar_3528: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Veis_2593: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Mpe_A2317: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Lcho_2678: Nitrite reductase, large subunit (EC 1.7.1.4) |
Nitrite reductase, large subunit (EC 1.7.1.4) |
| nasE |
Gene: Aave_2106: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Ajs_2840: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: CtesDRAFT_4594: Nitrite reductase, small subunit (EC 1.7.1.4) |
|
Gene: Pnap_1405: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Bpro_3278: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Rfer_2558: Nitrite reductase, small subunit (EC 1.7.1.4) |
2
Variovorax paradoxus S110 Gene: Vapar_2848: Nitrite reductase, small subunit (EC 1.7.1.4) Gene: Vapar_3529: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Veis_2594: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Mpe_A2318: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Lcho_2679: Nitrite reductase, small subunit (EC 1.7.1.4) |
Nitrite reductase, small subunit (EC 1.7.1.4) |
| narK |
|
|
|
|
Gene: Pnap_1411: Nitrate/nitrite antiporter |
*
Polaromonas sp. JS666 Site: position = -145 score = 4.79995 sequence = TGCACGCAATATGTGCA Site: position = -48 score = 4.78881 sequence = TGCACTAACTTTGTGAA Gene: Bpro_3273: Nitrate/nitrite antiporter |
|
*
Variovorax paradoxus S110 Site: position = -166 score = 4.62319 sequence = AGCACCGCTTTGGTGAG Gene: Vapar_3526: Nitrate/nitrite antiporter |
|
Gene: Mpe_A2315: Nitrate/nitrite antiporter |
Gene: Lcho_2676: Nitrate/nitrite antiporter |
Nitrate/nitrite antiporter |
| nasA |
Gene: Aave_2105: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Ajs_2841: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: CtesDRAFT_4527: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Daci_2370: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Pnap_1404: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Bpro_3279: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Rfer_2559: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Vapar_3530: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Veis_2595: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Mpe_A2319: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Lcho_2680: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
| cysG |
Gene: Aave_2103: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Ajs_2843: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
2
Comamonas testosteroni KF-1 Gene: CtesDRAFT_4528: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Gene: CtesDRAFT_0527: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Daci_2368: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Pnap_1402: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Bpro_3281: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Rfer_2883: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
2
Variovorax paradoxus S110 Gene: Vapar_2847: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Gene: Vapar_3532: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Veis_2292: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: Mpe_A2321: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| ybiB |
Gene: Aave_2104: Conserved hypothetical protein |
*
Acidovorax sp. JS42 Site: position = -120 score = 4.58336 sequence = GGCACCACTGCGGTGCA Gene: Ajs_2842: Conserved hypothetical protein |
Gene: CtesDRAFT_0528: Conserved hypothetical protein |
Gene: Daci_2369: Conserved hypothetical protein |
Gene: Pnap_1403: Conserved hypothetical protein |
Gene: Bpro_3280: Conserved hypothetical protein |
Gene: Rfer_2882: Conserved hypothetical protein |
Gene: Vapar_3531: Conserved hypothetical protein |
Gene: Veis_2293: Conserved hypothetical protein |
Gene: Mpe_A2320: Conserved hypothetical protein |
Gene: Lcho_2690: Conserved hypothetical protein |
Conserved hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |