Regulon of NtrC in Leptothrix cholodnii SP-6

Properties
Regulator type:	Transcription factor
TF locus tag:	Lcho_3584
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes	9
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -193 Score: 5.3 Sequence: TGCACTGAATTGGTGCC Locus tag: Lcho_3942 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Lcho_3941 Name: amtB Funciton: Ammonium transporter
	Lcho_3942	glnK	Nitrogen regulatory protein P-II
	Lcho_3941	amtB	Ammonium transporter
Position: -225 Score: 4.6 Sequence: GGCCCCGAAATGGTGCG Position: -178 Score: 5.1 Sequence: CGCACCATGTTTGTGCA Locus tag: Lcho_3581 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) Locus tag: Lcho_3582 Name: ntrZ Funciton: Conserved hypothetical signal peptide protein Locus tag: Lcho_3583 Name: ntrB Funciton: putative nitrogen regulation protein NR(II) Locus tag: Lcho_3584 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Lcho_3581	glnA	Glutamine synthetase type I (EC 6.3.1.2)
	Lcho_3582	ntrZ	Conserved hypothetical signal peptide protein
	Lcho_3583	ntrB	putative nitrogen regulation protein NR(II)
	Lcho_3584	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -300 Score: 4.4 Sequence: TGCACGCCCATGGTGCG Locus tag: Lcho_3843 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: Lcho_3842 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: Lcho_3841 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component
	Lcho_3843	nrtA	Nitrate ABC transporter, substrate-binding component
	Lcho_3842	nrtB	Nitrate ABC transporter, permease component
	Lcho_3841	nrtC	Nitrate ABC transporter, ATP-binding component

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD