Regulon of NtrC in Leptothrix cholodnii SP-6
| Regulator type: | Transcription factor |
| TF locus tag: | Lcho_3584 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -193
Score: 5.3 Sequence: TGCACTGAATTGGTGCC
Locus tag: Lcho_3942
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: Lcho_3941
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -225
Score: 4.6 Sequence: GGCCCCGAAATGGTGCG
Position: -178
Score: 5.1 Sequence: CGCACCATGTTTGTGCA
Locus tag: Lcho_3581
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Lcho_3582
Name: ntrZ Funciton: Conserved hypothetical signal peptide protein
Locus tag: Lcho_3583
Name: ntrB Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Lcho_3584
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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ntrZ
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Conserved hypothetical signal peptide protein
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ntrB
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putative nitrogen regulation protein NR(II)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -300
Score: 4.4 Sequence: TGCACGCCCATGGTGCG
Locus tag: Lcho_3843
Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Lcho_3842
Name: nrtB Funciton: Nitrate ABC transporter, permease component
Locus tag: Lcho_3841
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component |
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nrtA
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Nitrate ABC transporter, substrate-binding component
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nrtB
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Nitrate ABC transporter, permease component
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nrtC
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Nitrate ABC transporter, ATP-binding component
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |