Regulon of NtrC in Polaromonas naphthalenivorans CJ2

Properties
Regulator type:	Transcription factor
TF locus tag:	Pnap_2777
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes	10
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -250 Score: 4.6 Sequence: GGCCCTGAATTGGTGCG Position: -200 Score: 5 Sequence: CGCACTTTTTTGGTGCT Locus tag: Pnap_2780 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) Locus tag: Pnap_2779 Name: ntrZ Funciton: Conserved hypothetical signal peptide protein Locus tag: Pnap_2778 Name: ntrB Funciton: putative nitrogen regulation protein NR(II) Locus tag: Pnap_2777 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Pnap_2780	glnA	Glutamine synthetase type I (EC 6.3.1.2)
	Pnap_2779	ntrZ	Conserved hypothetical signal peptide protein
	Pnap_2778	ntrB	putative nitrogen regulation protein NR(II)
	Pnap_2777	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -334 Score: 4.7 Sequence: GGCGCCGAAATGGTGCA Locus tag: Pnap_1414 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: Pnap_1413 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: Pnap_1412 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component Locus tag: Pnap_1411 Name: narK Funciton: Nitrate/nitrite antiporter
	Pnap_1414	nrtA	Nitrate ABC transporter, substrate-binding component
	Pnap_1413	nrtB	Nitrate ABC transporter, permease component
	Pnap_1412	nrtC	Nitrate ABC transporter, ATP-binding component
	Pnap_1411	narK	Nitrate/nitrite antiporter
Position: -319 Score: 4.7 Sequence: TGCATCAAAGTTGTGCA Position: -295 Score: 4.5 Sequence: TGCATCATGATGGTGCG Locus tag: Pnap_0120 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Pnap_0121 Name: amtB Funciton: Ammonium transporter
	Pnap_0120	glnK	Nitrogen regulatory protein P-II
	Pnap_0121	amtB	Ammonium transporter

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD