Regulon of NtrC in Delftia acidovorans SPH-1
| Regulator type: | Transcription factor |
| TF locus tag: | Daci_4999 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -286
Score: 5.8 Sequence: TGCACTCATTTGGTGCA
Position: -214
Score: 5.6 Sequence: TGCACCGATTTGGTGAA
Position: -84
Score: 4.7 Sequence: TGCACTCAATGGATGCA
Locus tag: Daci_5002
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Daci_5001
Name: ntrZ Funciton: Conserved hypothetical signal peptide protein
Locus tag: Daci_5000
Name: ntrB Funciton: putative nitrogen regulation protein NR(II)
Locus tag: Daci_4999
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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ntrZ
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Conserved hypothetical signal peptide protein
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ntrB
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putative nitrogen regulation protein NR(II)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -252
Score: 4.6 Sequence: CGCACCGCTTTGATGCA
Locus tag: Daci_2371
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Daci_2370
Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Locus tag: Daci_2369
Name: ybiB Funciton: Conserved hypothetical protein
Locus tag: Daci_2368
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasA
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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ybiB
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Conserved hypothetical protein
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -277
Score: 4.9 Sequence: AGCACCGACTTGGTGCC
Locus tag: Daci_2377
Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: Daci_2376
Name: nrtB Funciton: Nitrate ABC transporter, permease component
Locus tag: Daci_2375
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component |
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nrtA
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Nitrate ABC transporter, substrate-binding component
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nrtB
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Nitrate ABC transporter, permease component
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nrtC
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Nitrate ABC transporter, ATP-binding component
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Position: -208
Score: 5.4 Sequence: TGCACTATCTTGGTGCA
Position: -136
Score: 4.7 Sequence: TGCACAAAGCCGGTGCA
Locus tag: Daci_0301
Name: CHP02001 Funciton: Conserved hypothetical protein CHP02001
Locus tag: Daci_0302
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: Daci_0303
Name: amtB Funciton: Ammonium transporter |
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CHP02001
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Conserved hypothetical protein CHP02001
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |