Regulon of NtrC in Delftia acidovorans SPH-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Daci_4999
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes	14
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -286 Score: 5.8 Sequence: TGCACTCATTTGGTGCA Position: -214 Score: 5.6 Sequence: TGCACCGATTTGGTGAA Position: -84 Score: 4.7 Sequence: TGCACTCAATGGATGCA Locus tag: Daci_5002 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) Locus tag: Daci_5001 Name: ntrZ Funciton: Conserved hypothetical signal peptide protein Locus tag: Daci_5000 Name: ntrB Funciton: putative nitrogen regulation protein NR(II) Locus tag: Daci_4999 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Daci_5002	glnA	Glutamine synthetase type I (EC 6.3.1.2)
	Daci_5001	ntrZ	Conserved hypothetical signal peptide protein
	Daci_5000	ntrB	putative nitrogen regulation protein NR(II)
	Daci_4999	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -252 Score: 4.6 Sequence: CGCACCGCTTTGATGCA Locus tag: Daci_2371 Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4) Locus tag: Daci_2370 Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) Locus tag: Daci_2369 Name: ybiB Funciton: Conserved hypothetical protein Locus tag: Daci_2368 Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
	Daci_2371	nasD	Nitrite reductase, large subunit (EC 1.7.1.4)
	Daci_2370	nasA	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
	Daci_2369	ybiB	Conserved hypothetical protein
	Daci_2368	cysG	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -277 Score: 4.9 Sequence: AGCACCGACTTGGTGCC Locus tag: Daci_2377 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: Daci_2376 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: Daci_2375 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component
	Daci_2377	nrtA	Nitrate ABC transporter, substrate-binding component
	Daci_2376	nrtB	Nitrate ABC transporter, permease component
	Daci_2375	nrtC	Nitrate ABC transporter, ATP-binding component
Position: -208 Score: 5.4 Sequence: TGCACTATCTTGGTGCA Position: -136 Score: 4.7 Sequence: TGCACAAAGCCGGTGCA Locus tag: Daci_0301 Name: CHP02001 Funciton: Conserved hypothetical protein CHP02001 Locus tag: Daci_0302 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Daci_0303 Name: amtB Funciton: Ammonium transporter
	Daci_0301	CHP02001	Conserved hypothetical protein CHP02001
	Daci_0302	glnK	Nitrogen regulatory protein P-II
	Daci_0303	amtB	Ammonium transporter

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD