Regulon of NtrC in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type:	Transcription factor
TF locus tag:	Rfer_2982
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Comamonadaceae
Statistics of regulated genes:
- Genes	11
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -236 Score: 4.7 Sequence: GGCCCTGAATTGGTGCA Position: -184 Score: 5.3 Sequence: CGCACTTAATTGGTGCT Locus tag: Rfer_2979 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) Locus tag: Rfer_2980 Name: ntrZ Funciton: Conserved hypothetical signal peptide protein Locus tag: Rfer_2981 Name: ntrB Funciton: putative nitrogen regulation protein NR(II) Locus tag: Rfer_2982 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Rfer_2979	glnA	Glutamine synthetase type I (EC 6.3.1.2)
	Rfer_2980	ntrZ	Conserved hypothetical signal peptide protein
	Rfer_2981	ntrB	putative nitrogen regulation protein NR(II)
	Rfer_2982	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -315 Score: 5.1 Sequence: TGCACAAAACTGGTGCC Locus tag: Rfer_2554 Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component Locus tag: Rfer_2555 Name: nrtB Funciton: Nitrate ABC transporter, permease component Locus tag: Rfer_2556 Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component Locus tag: Rfer_2557 Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4) Locus tag: Rfer_2558 Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
	Rfer_2554	nrtA	Nitrate ABC transporter, substrate-binding component
	Rfer_2555	nrtB	Nitrate ABC transporter, permease component
	Rfer_2556	nrtC	Nitrate ABC transporter, ATP-binding component
	Rfer_2557	nasD	Nitrite reductase, large subunit (EC 1.7.1.4)
	Rfer_2558	nasE	Nitrite reductase, small subunit (EC 1.7.1.4)
Position: -203 Score: 5 Sequence: TGCACCAAGTATGTGCG Locus tag: Rfer_0472 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Rfer_0473 Name: amtB Funciton: Ammonium transporter
	Rfer_0472	glnK	Nitrogen regulatory protein P-II
	Rfer_0473	amtB	Ammonium transporter

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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