Regulon of YrdX in Variovorax paradoxus S110

Properties
Regulator type:	Transcription factor
TF locus tag:	Vapar_0563
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Regulog:	YrdX - Comamonadaceae
Statistics of regulated genes:
- Genes	7
- Operons	1
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR

Regulated operons
	Locus Tag	Name	Function
Position: -343 Score: 6.8 Sequence: GTTGATCG-(5)-ATTGATTG Position: -242 Score: 7.1 Sequence: GTTGATCG-(5)-ATTGATCG Position: -111 Score: 7.2 Sequence: ATTGATCG-(3)-ATTGATCG Position: -74 Score: 4.9 Sequence: CTGGCACA-(3)-CCTGCAAA Locus tag: Vapar_0562 Name: PF02635 Funciton: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein Locus tag: Vapar_0561 Name: COG388 Funciton: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7) Locus tag: Vapar_0560 Name: COG2516 Funciton: Biotin synthase-related radical SAM domain protein Locus tag: Vapar_0559 Name: COG3153 Funciton: GCN5-related N-acetyltransferase Locus tag: Vapar_0558 Name: COG2144 Funciton: AIR synthase related protein/Selenophosphate synthetase-related Locus tag: Vapar_0557 Name: null Funciton: hypothetical protein Locus tag: Vapar_0556 Name: COG2072 (TrkA) Funciton: FAD dependent oxidoreductase
	Vapar_0562	PF02635	probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
	Vapar_0561	COG388	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
	Vapar_0560	COG2516	Biotin synthase-related radical SAM domain protein
	Vapar_0559	COG3153	GCN5-related N-acetyltransferase
	Vapar_0558	COG2144	AIR synthase related protein/Selenophosphate synthetase-related
	Vapar_0557		hypothetical protein
	Vapar_0556	COG2072 (TrkA)	FAD dependent oxidoreductase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD