Regulog YrdX - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1	5	1
Polaromonas naphthalenivorans CJ2	6	1
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	7	1
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
PF02635	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	* Methylibium petroleiphilum PM1 Site: position = -271 score = 7.1319 sequence = GTTGATCG-(5)-ATTGATCG Site: position = -139 score = 7.23988 sequence = CTTGATCG-(3)-ATTGATCG Site: position = -92 score = 4.82266 sequence = GTGGCACA-(3)-CGTGCAAA Gene: Mpe_A3479: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	* Polaromonas naphthalenivorans CJ2 Site: position = -320 score = 5.06978 sequence = ATTGCATG-(5)-ATTGCATT Site: position = -224 score = 6.12774 sequence = GTTTATCG-(5)-ATTGATTG Site: position = -105 score = 6.59385 sequence = ATTGATTG-(3)-CTTGATTG Site: position = -324 score = 6.59385 sequence = CTTGATTG-(5)-CTTGATTG Gene: Pnap_2105: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -343 score = 6.80888 sequence = GTTGATCG-(5)-ATTGATTG Site: position = -242 score = 7.1319 sequence = GTTGATCG-(5)-ATTGATCG Site: position = -111 score = 7.23988 sequence = ATTGATCG-(3)-ATTGATCG Site: position = -74 score = 4.93064 sequence = CTGGCACA-(3)-CCTGCAAA Gene: Vapar_0562: probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein	Verminephrobacter eiseniae EF01-2	probable GTP cyclohydrolase II/ATPase/Sulphur relay, DsrE/F-like protein
COG388	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3478: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2104: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0561: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)	Verminephrobacter eiseniae EF01-2	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (EC 3.5.5.7)
COG2516	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3477: Biotin synthase-related radical SAM domain protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2103: Biotin synthase-related radical SAM domain protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0560: Biotin synthase-related radical SAM domain protein	Verminephrobacter eiseniae EF01-2	Biotin synthase-related radical SAM domain protein
COG3153	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3476: GCN5-related N-acetyltransferase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2102: GCN5-related N-acetyltransferase	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0559: GCN5-related N-acetyltransferase	Verminephrobacter eiseniae EF01-2	GCN5-related N-acetyltransferase
COG2144	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3475: AIR synthase related protein/Selenophosphate synthetase-related	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2101: AIR synthase related protein/Selenophosphate synthetase-related	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0558: AIR synthase related protein/Selenophosphate synthetase-related	Verminephrobacter eiseniae EF01-2	AIR synthase related protein/Selenophosphate synthetase-related
Mpe_A3473	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3473: hypothetical protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2099: hypothetical protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0557: hypothetical protein	Verminephrobacter eiseniae EF01-2	hypothetical protein
COG2072 (TrkA)	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3472: FAD dependent oxidoreductase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2098: FAD dependent oxidoreductase	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0556: FAD dependent oxidoreductase	Verminephrobacter eiseniae EF01-2	FAD dependent oxidoreductase
COG438 (RfaG)	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A3474: Glycosyltransferase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2100: Glycosyltransferase	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Glycosyltransferase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrdX - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --