Regulon of UxuR2 in Variovorax paradoxus S110
| Regulator type: | Transcription factor |
| TF locus tag: | Vapar_5316, Vapar_0787 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | |
| Regulog: | UxuR2 - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 25 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -52
Score: 5 Sequence: GAATTGGCCTTACCACTTG
Locus tag: Vapar_0787
Name: uxuR2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Vapar_0786
Name: dctP Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Vapar_0785
Name: dctQ Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Vapar_0784
Name: dctM Funciton: TRAP-type C4-dicarboxylate transport system, large permease component
Locus tag: Vapar_0783
Name: uxaA Funciton: Altronate/Galactarate hydrolase (EC 4.2.1.7) |
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uxuR2
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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dctP
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TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
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dctQ
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TRAP-type C4-dicarboxylate transport system, small permease component
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dctM
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TRAP-type C4-dicarboxylate transport system, large permease component
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uxaA
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Altronate/Galactarate hydrolase (EC 4.2.1.7)
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Position: -157
Score: 4.7 Sequence: GATCTGGTCATGCCAGTTT
Position: -42
Score: 4.7 Sequence: AAAGTGGCCTCGCCAAATT
Position: -28
Score: 5.1 Sequence: AAATTGGTAAGGCCAAAAG
Locus tag: Vapar_5317
Name: null Funciton: amidohydrolase 2
Locus tag: Vapar_5318
Name: Rfer_3129 Funciton: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
Locus tag: Vapar_5319
Name: Rfer_3130 Funciton: Possible fucose ABC transporter, permease component
Locus tag: Vapar_5320
Name: Rfer_3131 Funciton: Possible fucose ABC transporter, substrate-binding component
Locus tag: Vapar_5321
Name: Rfer_3134 Funciton: L-fuconate dehydratase (EC 4.2.1.68)
Locus tag: Vapar_5322
Name: Rfer_3136 Funciton: SDR dehydrogenase clustered with L-fuconate utilization genes
Locus tag: Vapar_5323
Name: Rfer_3138 Funciton: Possible alternative L-fucose mutarotase |
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amidohydrolase 2
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Rfer_3129
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ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
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Rfer_3130
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Possible fucose ABC transporter, permease component
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Rfer_3131
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Possible fucose ABC transporter, substrate-binding component
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Rfer_3134
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L-fuconate dehydratase (EC 4.2.1.68)
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Rfer_3136
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SDR dehydrogenase clustered with L-fuconate utilization genes
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Rfer_3138
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Possible alternative L-fucose mutarotase
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Position: -165
Score: 5.1 Sequence: CTTTTGGCCTTACCAATTT
Position: -151
Score: 4.7 Sequence: AATTTGGCGAGGCCACTTT
Position: -36
Score: 4.7 Sequence: AAACTGGCATGACCAGATC
Locus tag: Vapar_5316
Name: uxuR2-2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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uxuR2-2
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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Position: -27
Score: 5.2 Sequence: AATGTGGTCTAACCAATTT
Locus tag: Vapar_2876
Name: uxuR3 Funciton: Predicted transcriptional regulator for glucuronate utilization, GntR family
Locus tag: Vapar_2877
Name: Aave_2470 Funciton: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
Locus tag: Vapar_2878
Name: Vapar_2878 Funciton: Amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: Vapar_2879
Name: idnD/tdh Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264)
Locus tag: Vapar_2880
Name: Vapar_2880 Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Vapar_2881
Name: Vapar_2881 Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Vapar_2882
Name: Vapar_2882 Funciton: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: Vapar_2883
Name: Bpro_3978 Funciton: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Locus tag: Vapar_2884
Name: mtlD Funciton: D-mannonate oxidoreductase (EC 1.1.1.57) |
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uxuR3
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Predicted transcriptional regulator for glucuronate utilization, GntR family
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Aave_2470
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Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
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Vapar_2878
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Amino acid ABC transporter, periplasmic amino acid-binding protein
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idnD/tdh
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L-idonate 5-dehydrogenase (EC 1.1.1.264)
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Vapar_2880
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Amino acid ABC transporter, inner membrane subunit
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Vapar_2881
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Amino acid ABC transporter, inner membrane subunit
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Vapar_2882
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Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
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Bpro_3978
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Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
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mtlD
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D-mannonate oxidoreductase (EC 1.1.1.57)
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Position: -104
Score: 5 Sequence: CAAGTGGTAAGGCCAATTC
Locus tag: Vapar_0788
Name: Bpro_3961 Funciton: 2-keto-3-deoxy-L-fuconate dehydrogenase
Locus tag: Vapar_0789
Name: Bpro_3960 Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Vapar_0790
Name: mhpD Funciton: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) |
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Bpro_3961
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2-keto-3-deoxy-L-fuconate dehydrogenase
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Bpro_3960
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Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
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mhpD
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2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |