Regulog UxuR2 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Galacturonate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 24 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Glucuronate utilization
By pathway - Galacturonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2	9	2
Polaromonas sp. JS666	18	4
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	25	5
Verminephrobacter eiseniae EF01-2	20	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
uxuR2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = 30 score = 5.47591 sequence = CAATTGGCCTTACCACTTG Gene: Bpro_3963: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -52 score = 5.04502 sequence = GAATTGGCCTTACCACTTG Gene: Vapar_0787: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	* Verminephrobacter eiseniae EF01-2 Site: position = -62 score = 5.14886 sequence = GAATTGGCCTTACCAATTT Gene: Veis_1542: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3964: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0786: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	2 Verminephrobacter eiseniae EF01-2 Gene: Veis_1541: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Gene: Veis_1540: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctQ	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3965: TRAP-type C4-dicarboxylate transport system, small permease component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0785: TRAP-type C4-dicarboxylate transport system, small permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_1539: TRAP-type C4-dicarboxylate transport system, small permease component	TRAP-type C4-dicarboxylate transport system, small permease component
dctM	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3966: TRAP-type C4-dicarboxylate transport system, large permease component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0784: TRAP-type C4-dicarboxylate transport system, large permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_1538: TRAP-type C4-dicarboxylate transport system, large permease component	TRAP-type C4-dicarboxylate transport system, large permease component
uxaA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3967: Altronate/Galactarate hydrolase (EC 4.2.1.7)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0783: Altronate/Galactarate hydrolase (EC 4.2.1.7)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1537: Altronate/Galactarate hydrolase (EC 4.2.1.7)	Altronate/Galactarate hydrolase (EC 4.2.1.7)

CRON 2.
COG4948	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -131 score = 5.47591 sequence = CAAGTGGTAAGGCCAATTG Gene: Bpro_3962: Muconate cycloisomerase (EC 5.5.1.1)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_5455: Muconate cycloisomerase (EC 5.5.1.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2271: Muconate cycloisomerase (EC 5.5.1.1)	Muconate cycloisomerase (EC 5.5.1.1)
Bpro_3961	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3961: 2-keto-3-deoxy-L-fuconate dehydrogenase	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -104 score = 5.04502 sequence = CAAGTGGTAAGGCCAATTC Gene: Vapar_0788: 2-keto-3-deoxy-L-fuconate dehydrogenase	Verminephrobacter eiseniae EF01-2	2-keto-3-deoxy-L-fuconate dehydrogenase
Bpro_3960	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3960: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0789: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Verminephrobacter eiseniae EF01-2 Gene: Veis_0638: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
mhpD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A0334: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3959: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3133: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	Variovorax paradoxus S110 Gene: Vapar_0790: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1085: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)

CRON 3.
uxuR3	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -198 score = 3.99195 sequence = AGTTTGGTCTAACCAGCAA Gene: Bpro_3977: Predicted transcriptional regulator for glucuronate utilization, GntR family	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -27 score = 5.15066 sequence = AATGTGGTCTAACCAATTT Gene: Vapar_2876: Predicted transcriptional regulator for glucuronate utilization, GntR family	* Verminephrobacter eiseniae EF01-2 Site: position = -25 score = 5.3235 sequence = TAATTGGTCTATCCAATTT Gene: Veis_3567: Predicted transcriptional regulator for glucuronate utilization, GntR family	Predicted transcriptional regulator for glucuronate utilization, GntR family
Aave_2470	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2470: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4214: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor	Rhodoferax ferrireducens DSM 15236	2 Variovorax paradoxus S110 Gene: Vapar_4767: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor Gene: Vapar_2877: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor	Verminephrobacter eiseniae EF01-2	Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
Vapar_2878	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2878: Amino acid ABC transporter, periplasmic amino acid-binding protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_3566: Amino acid ABC transporter, periplasmic amino acid-binding protein	Amino acid ABC transporter, periplasmic amino acid-binding protein
idnD/tdh	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2879: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Verminephrobacter eiseniae EF01-2 Gene: Veis_3565: L-idonate 5-dehydrogenase (EC 1.1.1.264)	L-idonate 5-dehydrogenase (EC 1.1.1.264)
Vapar_2880	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2880: Amino acid ABC transporter, inner membrane subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_3564: Amino acid ABC transporter, inner membrane subunit	Amino acid ABC transporter, inner membrane subunit
Vapar_2881	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2881: Amino acid ABC transporter, inner membrane subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_3563: Amino acid ABC transporter, inner membrane subunit	Amino acid ABC transporter, inner membrane subunit
Vapar_2882	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2882: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)	Verminephrobacter eiseniae EF01-2 Gene: Veis_3562: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)	Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bpro_3978	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3978: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2883: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_3561: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein	Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
mtlD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2884: D-mannonate oxidoreductase (EC 1.1.1.57)	Verminephrobacter eiseniae EF01-2 Gene: Veis_3560: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
Pnap_1486	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	2 Polaromonas naphthalenivorans CJ2 Gene: Pnap_2067: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) Gene: Pnap_1486: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Polaromonas sp. JS666 Gene: Bpro_1737: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3414: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Verminephrobacter eiseniae EF01-2 Gene: Veis_3559: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Pnap_2074	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	* Polaromonas naphthalenivorans CJ2 Site: position = -262 score = 4.93394 sequence = TATTTGGTCAGGCCACATT Site: position = -248 score = 4.30115 sequence = ACATTGGCCTGACCGAAAG Site: position = -107 score = 3.906 sequence = TATACGGTAAGGCCAATCT Site: position = -75 score = 5.08167 sequence = AAATTGGCCTTACCAAATA Gene: Pnap_2074: polar amino acid ABC transporter, inner membrane subunit	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	polar amino acid ABC transporter, inner membrane subunit
Pnap_2073	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2073: polar amino acid ABC transporter, inner membrane subunit	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	polar amino acid ABC transporter, inner membrane subunit
Pnap_2072	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2072: ABC transporter related	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	ABC transporter related
Pnap_2071	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2071: extracellular solute-binding protein, family 3	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	extracellular solute-binding protein, family 3
Pnap_2070	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2070: Alcohol dehydrogenase GroES domain protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Alcohol dehydrogenase GroES domain protein
mtlD2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2069: Mannitol dehydrogenase, C-terminal domain	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Mannitol dehydrogenase, C-terminal domain
uxaA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2068: Altronate dehydratase	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Altronate dehydratase

CRON 4.
uxuR2-2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	* Polaromonas naphthalenivorans CJ2 Site: position = -188 score = 5.08167 sequence = TATTTGGTAAGGCCAATTT Site: position = -156 score = 3.906 sequence = AGATTGGCCTTACCGTATA Site: position = -15 score = 4.30115 sequence = CTTTCGGTCAGGCCAATGT Site: position = -1 score = 4.93394 sequence = AATGTGGCCTGACCAAATA Gene: Pnap_2075: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -165 score = 5.05008 sequence = CTTTTGGCCTTACCAATTT Site: position = -151 score = 4.69657 sequence = AATTTGGCGAGGCCACTTT Site: position = -36 score = 4.6616 sequence = AAACTGGCATGACCAGATC Gene: Vapar_5316: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Verminephrobacter eiseniae EF01-2	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family

CRON 5.
Vapar_5317	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -157 score = 4.6616 sequence = GATCTGGTCATGCCAGTTT Site: position = -42 score = 4.69657 sequence = AAAGTGGCCTCGCCAAATT Site: position = -28 score = 5.05008 sequence = AAATTGGTAAGGCCAAAAG Gene: Vapar_5317: amidohydrolase 2	Verminephrobacter eiseniae EF01-2	amidohydrolase 2
Rfer_3129	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3129: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)	Variovorax paradoxus S110 Gene: Vapar_5318: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1088: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)	ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
Rfer_3130	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3130: Possible fucose ABC transporter, permease component	Variovorax paradoxus S110 Gene: Vapar_5319: Possible fucose ABC transporter, permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_1087: Possible fucose ABC transporter, permease component	Possible fucose ABC transporter, permease component
Rfer_3131	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3131: Possible fucose ABC transporter, substrate-binding component	Variovorax paradoxus S110 Gene: Vapar_5320: Possible fucose ABC transporter, substrate-binding component	Verminephrobacter eiseniae EF01-2 Gene: Veis_1086: Possible fucose ABC transporter, substrate-binding component	Possible fucose ABC transporter, substrate-binding component
Rfer_3134	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3134: L-fuconate dehydratase (EC 4.2.1.68)	Variovorax paradoxus S110 Gene: Vapar_5321: L-fuconate dehydratase (EC 4.2.1.68)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1084: L-fuconate dehydratase (EC 4.2.1.68)	L-fuconate dehydratase (EC 4.2.1.68)
Rfer_3136	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3136: SDR dehydrogenase clustered with L-fuconate utilization genes	Variovorax paradoxus S110 Gene: Vapar_5322: SDR dehydrogenase clustered with L-fuconate utilization genes	Verminephrobacter eiseniae EF01-2	SDR dehydrogenase clustered with L-fuconate utilization genes
Rfer_3138	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3138: Possible alternative L-fucose mutarotase	Variovorax paradoxus S110 Gene: Vapar_5323: Possible alternative L-fucose mutarotase	Verminephrobacter eiseniae EF01-2	Possible alternative L-fucose mutarotase

CRON 6.
uxuR2-3	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	* Verminephrobacter eiseniae EF01-2 Site: position = -38 score = 4.86503 sequence = CGATTGGCCTGACCATTGA Gene: Veis_0743: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
argE	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_0411: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3755: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)	Verminephrobacter eiseniae EF01-2 Gene: Veis_0744: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)	Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
ddpA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0745: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
dppB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0746: Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
dppC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0747: Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)

CRON 7.
Bpro_3976	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -161 score = 3.99195 sequence = TTGCTGGTTAGACCAAACT Gene: Bpro_3976: ABC transporter amino acid-binding protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	ABC transporter amino acid-binding protein
Bpro_3975	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3975: amino acid ABC transporter, permease protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	amino acid ABC transporter, permease protein
Bpro_3974	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3974: amino acid ABC transporter, permease protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	amino acid ABC transporter, permease protein
Bpro_3973	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3973: Glutamine transport ATP-binding protein glnQ	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Glutamine transport ATP-binding protein glnQ
COG2055	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3972: Malate dehydrogenase (EC 1.1.1.37)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_2575: Malate dehydrogenase (EC 1.1.1.37)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4538: Malate dehydrogenase (EC 1.1.1.37)	Malate dehydrogenase (EC 1.1.1.37)
COG2706	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1490: 3-carboxymuconate cyclase	Polaromonas sp. JS666 Gene: Bpro_3971: 3-carboxymuconate cyclase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3646: 3-carboxymuconate cyclase	Verminephrobacter eiseniae EF01-2	3-carboxymuconate cyclase
uxuA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3970: D-mannonate oxidoreductase (EC 1.1.1.57)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	D-mannonate oxidoreductase (EC 1.1.1.57)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR2 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --