Regulon of UxuR2 in Polaromonas sp. JS666

Properties
Regulator type:	Transcription factor
TF locus tag:	Bpro_3963
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucuronate utilization; Galacturonate utilization
Effector:
Regulog:	UxuR2 - Comamonadaceae
Statistics of regulated genes:
- Genes	18
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 24 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Glucuronate utilization
By pathway - Galacturonate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -198 Score: 4 Sequence: AGTTTGGTCTAACCAGCAA Locus tag: Bpro_3977 Name: uxuR3 Funciton: Predicted transcriptional regulator for glucuronate utilization, GntR family Locus tag: Bpro_3978 Name: Bpro_3978 Funciton: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
	Bpro_3977	uxuR3	Predicted transcriptional regulator for glucuronate utilization, GntR family
	Bpro_3978	Bpro_3978	Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Position: -131 Score: 5.5 Sequence: CAAGTGGTAAGGCCAATTG Locus tag: Bpro_3962 Name: COG4948 Funciton: Muconate cycloisomerase (EC 5.5.1.1) Locus tag: Bpro_3961 Name: Bpro_3961 Funciton: 2-keto-3-deoxy-L-fuconate dehydrogenase Locus tag: Bpro_3960 Name: Bpro_3960 Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Locus tag: Bpro_3959 Name: mhpD Funciton: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
	Bpro_3962	COG4948	Muconate cycloisomerase (EC 5.5.1.1)
	Bpro_3961	Bpro_3961	2-keto-3-deoxy-L-fuconate dehydrogenase
	Bpro_3960	Bpro_3960	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
	Bpro_3959	mhpD	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
Position: 30 Score: 5.5 Sequence: CAATTGGCCTTACCACTTG Locus tag: Bpro_3963 Name: uxuR2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family Locus tag: Bpro_3964 Name: dctP Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein Locus tag: Bpro_3965 Name: dctQ Funciton: TRAP-type C4-dicarboxylate transport system, small permease component Locus tag: Bpro_3966 Name: dctM Funciton: TRAP-type C4-dicarboxylate transport system, large permease component Locus tag: Bpro_3967 Name: uxaA Funciton: Altronate/Galactarate hydrolase (EC 4.2.1.7)
	Bpro_3963	uxuR2	Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
	Bpro_3964	dctP	TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
	Bpro_3965	dctQ	TRAP-type C4-dicarboxylate transport system, small permease component
	Bpro_3966	dctM	TRAP-type C4-dicarboxylate transport system, large permease component
	Bpro_3967	uxaA	Altronate/Galactarate hydrolase (EC 4.2.1.7)
Position: -161 Score: 4 Sequence: TTGCTGGTTAGACCAAACT Locus tag: Bpro_3976 Name: null Funciton: ABC transporter amino acid-binding protein Locus tag: Bpro_3975 Name: null Funciton: amino acid ABC transporter, permease protein Locus tag: Bpro_3974 Name: null Funciton: amino acid ABC transporter, permease protein Locus tag: Bpro_3973 Name: null Funciton: Glutamine transport ATP-binding protein glnQ Locus tag: Bpro_3972 Name: COG2055 Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Bpro_3971 Name: COG2706 Funciton: 3-carboxymuconate cyclase Locus tag: Bpro_3970 Name: uxuA Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
	Bpro_3976		ABC transporter amino acid-binding protein
	Bpro_3975		amino acid ABC transporter, permease protein
	Bpro_3974		amino acid ABC transporter, permease protein
	Bpro_3973		Glutamine transport ATP-binding protein glnQ
	Bpro_3972	COG2055	Malate dehydrogenase (EC 1.1.1.37)
	Bpro_3971	COG2706	3-carboxymuconate cyclase
	Bpro_3970	uxuA	D-mannonate oxidoreductase (EC 1.1.1.57)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of UxuR2 in Polaromonas sp. JS666

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --