Regulon of UxuR2 in Verminephrobacter eiseniae EF01-2
| Regulator type: | Transcription factor |
| TF locus tag: | Veis_1542, Veis_0743 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | |
| Regulog: | UxuR2 - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -62
Score: 5.1 Sequence: GAATTGGCCTTACCAATTT
Locus tag: Veis_1542
Name: uxuR2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Veis_1541
Name: dctP Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Veis_1540
Name: dctP Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Veis_1539
Name: dctQ Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Veis_1538
Name: dctM Funciton: TRAP-type C4-dicarboxylate transport system, large permease component
Locus tag: Veis_1537
Name: uxaA Funciton: Altronate/Galactarate hydrolase (EC 4.2.1.7) |
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uxuR2
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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dctP
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TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
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dctP
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TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
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dctQ
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TRAP-type C4-dicarboxylate transport system, small permease component
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dctM
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TRAP-type C4-dicarboxylate transport system, large permease component
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uxaA
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Altronate/Galactarate hydrolase (EC 4.2.1.7)
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Position: -25
Score: 5.3 Sequence: TAATTGGTCTATCCAATTT
Locus tag: Veis_3567
Name: uxuR3 Funciton: Predicted transcriptional regulator for glucuronate utilization, GntR family
Locus tag: Veis_3566
Name: Vapar_2878 Funciton: Amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: Veis_3565
Name: idnD/tdh Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264)
Locus tag: Veis_3564
Name: Vapar_2880 Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Veis_3563
Name: Vapar_2881 Funciton: Amino acid ABC transporter, inner membrane subunit
Locus tag: Veis_3562
Name: Vapar_2882 Funciton: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Locus tag: Veis_3561
Name: Bpro_3978 Funciton: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Locus tag: Veis_3560
Name: mtlD Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
Locus tag: Veis_3559
Name: Pnap_1486 Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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uxuR3
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Predicted transcriptional regulator for glucuronate utilization, GntR family
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Vapar_2878
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Amino acid ABC transporter, periplasmic amino acid-binding protein
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idnD/tdh
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L-idonate 5-dehydrogenase (EC 1.1.1.264)
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Vapar_2880
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Amino acid ABC transporter, inner membrane subunit
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Vapar_2881
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Amino acid ABC transporter, inner membrane subunit
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Vapar_2882
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Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
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Bpro_3978
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Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
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mtlD
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D-mannonate oxidoreductase (EC 1.1.1.57)
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Pnap_1486
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
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Position: -38
Score: 4.9 Sequence: CGATTGGCCTGACCATTGA
Locus tag: Veis_0743
Name: uxuR2-3 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Veis_0744
Name: argE Funciton: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
Locus tag: Veis_0745
Name: ddpA Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Locus tag: Veis_0746
Name: dppB Funciton: Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: Veis_0747
Name: dppC Funciton: Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) |
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uxuR2-3
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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argE
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Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
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ddpA
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Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
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dppB
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Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
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dppC
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Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |