Regulon of SdhR in Variovorax paradoxus S110

Properties
Regulator type:	Transcription factor
TF locus tag:	Vapar_1431
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	13
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -4 Score: 6.8 Sequence: TCTTATGTCTTATATAAGATATGCTC Locus tag: Vapar_1431 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Vapar_1430 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Vapar_1429 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Vapar_1428 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Vapar_1427 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Vapar_1426 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Vapar_1425 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Vapar_1431	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Vapar_1430	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Vapar_1429	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Vapar_1428	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Vapar_1427	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Vapar_1426	COG2938	succinate dehydrogenase iron-sulfur subunit
	Vapar_1425	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -151 Score: 6.8 Sequence: GAGCATATCTTATATAAGACATAAGA Locus tag: Vapar_1432 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Vapar_1433 Name: tam Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) Locus tag: Vapar_1434 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: Vapar_1435 Name: Aave_2209 Funciton: hypothetical protein Locus tag: Vapar_1436 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	Vapar_1432	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Vapar_1433	tam	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
	Vapar_1434	citE	Citrate lyase beta chain (EC 4.1.3.6)
	Vapar_1435	Aave_2209	hypothetical protein
	Vapar_1436	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -97 Score: 7.1 Sequence: AAATATGTCTTCTATAAGACATAAGA Locus tag: Vapar_1869 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Vapar_1869	aceA	Isocitrate lyase (EC 4.1.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD