Regulog SdhR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	13	3
Acidovorax sp. JS42	13	3
Comamonas testosteroni KF-1	13	3
Delftia acidovorans SPH-1	13	3
Leptothrix cholodnii SP-6	11	4
Methylibium petroleiphilum PM1	10	3
Polaromonas naphthalenivorans CJ2	12	3
Polaromonas sp. JS666	12	3
Rhodoferax ferrireducens DSM 15236	12	3
Variovorax paradoxus S110	13	3
Verminephrobacter eiseniae EF01-2	9	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
sdhR	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -20 score = 7.03683 sequence = TCTTATGTCTTATATAAGATATGATG Gene: Aave_2205: Transcriptional regulator of TCA cycle, GntR family	* Acidovorax sp. JS42 Site: position = -4 score = 7.23905 sequence = TCTTATGTCTTATATAAGATATGATC Gene: Ajs_2792: Transcriptional regulator of TCA cycle, GntR family	* Comamonas testosteroni KF-1 Site: position = -4 score = 7.23905 sequence = TCTTATGTCTTATATAAGATATGATC Gene: CtesDRAFT_0621: Transcriptional regulator of TCA cycle, GntR family	* Delftia acidovorans SPH-1 Site: position = -87 score = 7.23905 sequence = TCTTATGTCTTATATAAGATATGATC Gene: Daci_2428: Transcriptional regulator of TCA cycle, GntR family	* Leptothrix cholodnii SP-6 Site: position = -73 score = 7.52066 sequence = TCTTATGTCTTATATAAGACATCTGT Gene: Lcho_2707: Transcriptional regulator of TCA cycle, GntR family	* Methylibium petroleiphilum PM1 Site: position = -74 score = 7.372 sequence = TCTTATGTCTTATATAAGACATCTTT Gene: Mpe_A2171: Transcriptional regulator of TCA cycle, GntR family	* Polaromonas naphthalenivorans CJ2 Site: position = -38 score = 7.3504 sequence = TCTTATGTCTTATATAAGATATGATT Gene: Pnap_3031: Transcriptional regulator of TCA cycle, GntR family	* Polaromonas sp. JS666 Site: position = -49 score = 7.4713 sequence = TCTTATGTCTTATATAAGATATGATA Gene: Bpro_3599: Transcriptional regulator of TCA cycle, GntR family	* Rhodoferax ferrireducens DSM 15236 Site: position = -23 score = 6.72716 sequence = TCTTATGTCTTATATAAGATAAGATG Gene: Rfer_1802: Transcriptional regulator of TCA cycle, GntR family	* Variovorax paradoxus S110 Site: position = -4 score = 6.80457 sequence = TCTTATGTCTTATATAAGATATGCTC Gene: Vapar_1431: Transcriptional regulator of TCA cycle, GntR family	* Verminephrobacter eiseniae EF01-2 Site: position = -33 score = 7.23905 sequence = TCTTATGTCTTATATAAGATATGATC Gene: Veis_4355: Transcriptional regulator of TCA cycle, GntR family	Transcriptional regulator of TCA cycle, GntR family
sdhC	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2204: Succinate dehydrogenase cytochrome b-556 subunit	Acidovorax sp. JS42 Gene: Ajs_2793: Succinate dehydrogenase cytochrome b-556 subunit	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0620: Succinate dehydrogenase cytochrome b-556 subunit	Delftia acidovorans SPH-1 Gene: Daci_2427: Succinate dehydrogenase cytochrome b-556 subunit	Leptothrix cholodnii SP-6 Gene: Lcho_2706: Succinate dehydrogenase cytochrome b-556 subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A2170: Succinate dehydrogenase cytochrome b-556 subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3032: Succinate dehydrogenase cytochrome b-556 subunit	Polaromonas sp. JS666 Gene: Bpro_3600: Succinate dehydrogenase cytochrome b-556 subunit	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1801: Succinate dehydrogenase cytochrome b-556 subunit	Variovorax paradoxus S110 Gene: Vapar_1430: Succinate dehydrogenase cytochrome b-556 subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_4354: Succinate dehydrogenase cytochrome b-556 subunit	Succinate dehydrogenase cytochrome b-556 subunit
sdhD	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2203: Succinate dehydrogenase hydrophobic membrane anchor protein	Acidovorax sp. JS42 Gene: Ajs_2794: Succinate dehydrogenase hydrophobic membrane anchor protein	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0619: Succinate dehydrogenase hydrophobic membrane anchor protein	Delftia acidovorans SPH-1 Gene: Daci_2426: Succinate dehydrogenase hydrophobic membrane anchor protein	Leptothrix cholodnii SP-6 Gene: Lcho_2705: Succinate dehydrogenase hydrophobic membrane anchor protein	Methylibium petroleiphilum PM1 Gene: Mpe_A2169: Succinate dehydrogenase hydrophobic membrane anchor protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3033: Succinate dehydrogenase hydrophobic membrane anchor protein	Polaromonas sp. JS666 Gene: Bpro_3601: Succinate dehydrogenase hydrophobic membrane anchor protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1800: Succinate dehydrogenase hydrophobic membrane anchor protein	Variovorax paradoxus S110 Gene: Vapar_1429: Succinate dehydrogenase hydrophobic membrane anchor protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_4353: Succinate dehydrogenase hydrophobic membrane anchor protein	Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2202: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Acidovorax sp. JS42 Gene: Ajs_2795: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0618: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Delftia acidovorans SPH-1 Gene: Daci_2425: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Leptothrix cholodnii SP-6 Gene: Lcho_2704: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A2168: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3034: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Polaromonas sp. JS666 Gene: Bpro_3602: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1799: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Variovorax paradoxus S110 Gene: Vapar_1428: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4352: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2201: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Acidovorax sp. JS42 Gene: Ajs_2796: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0617: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Delftia acidovorans SPH-1 Gene: Daci_2424: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Leptothrix cholodnii SP-6 Gene: Lcho_2703: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A2167: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3035: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Polaromonas sp. JS666 Gene: Bpro_3603: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1798: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Variovorax paradoxus S110 Gene: Vapar_1427: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4351: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
COG2938	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2200: succinate dehydrogenase iron-sulfur subunit	Acidovorax sp. JS42 Gene: Ajs_2797: succinate dehydrogenase iron-sulfur subunit	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0616: succinate dehydrogenase iron-sulfur subunit	Delftia acidovorans SPH-1 Gene: Daci_2423: succinate dehydrogenase iron-sulfur subunit	Leptothrix cholodnii SP-6 Gene: Lcho_2702: succinate dehydrogenase iron-sulfur subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A2166: succinate dehydrogenase iron-sulfur subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3036: succinate dehydrogenase iron-sulfur subunit	Polaromonas sp. JS666 Gene: Bpro_3604: succinate dehydrogenase iron-sulfur subunit	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1797: succinate dehydrogenase iron-sulfur subunit	Variovorax paradoxus S110 Gene: Vapar_1426: succinate dehydrogenase iron-sulfur subunit	Verminephrobacter eiseniae EF01-2	succinate dehydrogenase iron-sulfur subunit
gltA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2199: Citrate synthase (si) (EC 2.3.3.1)	Acidovorax sp. JS42 Gene: Ajs_2798: Citrate synthase (si) (EC 2.3.3.1)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0615: Citrate synthase (si) (EC 2.3.3.1)	Delftia acidovorans SPH-1 Gene: Daci_2422: Citrate synthase (si) (EC 2.3.3.1)	Leptothrix cholodnii SP-6 Gene: Lcho_2701: Citrate synthase (si) (EC 2.3.3.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A2165: Citrate synthase (si) (EC 2.3.3.1)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3037: Citrate synthase (si) (EC 2.3.3.1)	Polaromonas sp. JS666 Gene: Bpro_3605: Citrate synthase (si) (EC 2.3.3.1)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1796: Citrate synthase (si) (EC 2.3.3.1)	Variovorax paradoxus S110 Gene: Vapar_1425: Citrate synthase (si) (EC 2.3.3.1)	2 Verminephrobacter eiseniae EF01-2 Gene: Veis_1400: Citrate synthase (si) (EC 2.3.3.1) Gene: Veis_4350: Citrate synthase (si) (EC 2.3.3.1)	Citrate synthase (si) (EC 2.3.3.1)

CRON 2.
aceA	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -115 score = 7.52667 sequence = TTTTATGTCTTATATAAGACATAAGA Gene: Aave_2860: Isocitrate lyase (EC 4.1.3.1)	* Acidovorax sp. JS42 Site: position = -115 score = 6.94881 sequence = ATTTATCTCTTATATAAGACATAAGA Gene: Ajs_2401: Isocitrate lyase (EC 4.1.3.1)	* Comamonas testosteroni KF-1 Site: position = -109 score = 6.11808 sequence = ATTTCAGTCTTTTATAAGACATAAGA Gene: CtesDRAFT_0860: Isocitrate lyase (EC 4.1.3.1)	* Delftia acidovorans SPH-1 Site: position = -1 score = 5.30837 sequence = GATGAGGTCTTCTATAAGACTTAAAT Site: position = -31 score = 5.94397 sequence = AATTTAGTCTTGTATAAGACACAAGA Gene: Daci_4617: Isocitrate lyase (EC 4.1.3.1)	* Leptothrix cholodnii SP-6 Site: position = -102 score = 7.12546 sequence = ATTTATATCTTATATAAGACATAAGT Gene: Lcho_1744: Isocitrate lyase (EC 4.1.3.1)	* Methylibium petroleiphilum PM1 Site: position = -103 score = 5.99547 sequence = ATAGAAGTCTTATATAAGATAGAAGT Gene: Mpe_A1889: Isocitrate lyase (EC 4.1.3.1)	* Polaromonas naphthalenivorans CJ2 Site: position = -91 score = 6.49199 sequence = TAAATAGTCTTATATAAGACATAAGA Gene: Pnap_2855: Isocitrate lyase (EC 4.1.3.1)	* Polaromonas sp. JS666 Site: position = -102 score = 7.0961 sequence = ATTTTTGTCTTATATAAGACATAAGA Gene: Bpro_2101: Isocitrate lyase (EC 4.1.3.1)	* Rhodoferax ferrireducens DSM 15236 Site: position = -124 score = 6.68077 sequence = AAAAATGTCTTCTATAAGACATAAGA Site: position = -94 score = 5.30377 sequence = TTTTTAGTCTTATACAAGACCTAAAA Gene: Rfer_1335: Isocitrate lyase (EC 4.1.3.1)	* Variovorax paradoxus S110 Site: position = -97 score = 7.13245 sequence = AAATATGTCTTCTATAAGACATAAGA Gene: Vapar_1869: Isocitrate lyase (EC 4.1.3.1)	* Verminephrobacter eiseniae EF01-2 Site: position = -116 score = 6.38721 sequence = TTTCATCTCTTCTATAAGACATAAGA Gene: Veis_3088: Isocitrate lyase (EC 4.1.3.1)	Isocitrate lyase (EC 4.1.3.1)

CRON 3.
mdh	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -156 score = 7.03683 sequence = CATCATATCTTATATAAGACATAAGA Gene: Aave_2206: Malate dehydrogenase (EC 1.1.1.37)	* Acidovorax sp. JS42 Site: position = -91 score = 7.23905 sequence = GATCATATCTTATATAAGACATAAGA Gene: Ajs_2791: Malate dehydrogenase (EC 1.1.1.37)	* Comamonas testosteroni KF-1 Site: position = -155 score = 7.23905 sequence = GATCATATCTTATATAAGACATAAGA Gene: CtesDRAFT_0622: Malate dehydrogenase (EC 1.1.1.37)	* Delftia acidovorans SPH-1 Site: position = -157 score = 7.23905 sequence = GATCATATCTTATATAAGACATAAGA Gene: Daci_2429: Malate dehydrogenase (EC 1.1.1.37)	* Leptothrix cholodnii SP-6 Site: position = -175 score = 7.52066 sequence = ACAGATGTCTTATATAAGACATAAGA Gene: Lcho_2708: Malate dehydrogenase (EC 1.1.1.37)	* Methylibium petroleiphilum PM1 Site: position = -152 score = 7.372 sequence = AAAGATGTCTTATATAAGACATAAGA Gene: Mpe_A2172: Malate dehydrogenase (EC 1.1.1.37)	* Polaromonas naphthalenivorans CJ2 Site: position = -202 score = 7.3504 sequence = AATCATATCTTATATAAGACATAAGA Gene: Pnap_3030: Malate dehydrogenase (EC 1.1.1.37)	* Polaromonas sp. JS666 Site: position = -239 score = 7.4713 sequence = TATCATATCTTATATAAGACATAAGA Gene: Bpro_3598: Malate dehydrogenase (EC 1.1.1.37)	* Rhodoferax ferrireducens DSM 15236 Site: position = -138 score = 6.72716 sequence = CATCTTATCTTATATAAGACATAAGA Gene: Rfer_1803: Malate dehydrogenase (EC 1.1.1.37)	* Variovorax paradoxus S110 Site: position = -151 score = 6.80457 sequence = GAGCATATCTTATATAAGACATAAGA Gene: Vapar_1432: Malate dehydrogenase (EC 1.1.1.37)	* Verminephrobacter eiseniae EF01-2 Site: position = -199 score = 7.23905 sequence = GATCATATCTTATATAAGACATAAGA Gene: Veis_4356: Malate dehydrogenase (EC 1.1.1.37)	Malate dehydrogenase (EC 1.1.1.37)
tam	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2207: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	Acidovorax sp. JS42 Gene: Ajs_2790: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0623: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	2 Delftia acidovorans SPH-1 Gene: Daci_3508: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) Gene: Daci_2430: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2675: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_1433: Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	Verminephrobacter eiseniae EF01-2	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
citE	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2208: Citrate lyase beta chain (EC 4.1.3.6)	Acidovorax sp. JS42 Gene: Ajs_2789: Citrate lyase beta chain (EC 4.1.3.6)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0624: Citrate lyase beta chain (EC 4.1.3.6)	Delftia acidovorans SPH-1 Gene: Daci_2431: Citrate lyase beta chain (EC 4.1.3.6)	Leptothrix cholodnii SP-6 Gene: Lcho_2709: Citrate lyase beta chain (EC 4.1.3.6)	Methylibium petroleiphilum PM1 Gene: Mpe_A2173: Citrate lyase beta chain (EC 4.1.3.6)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3029: Citrate lyase beta chain (EC 4.1.3.6)	Polaromonas sp. JS666 Gene: Bpro_3597: Citrate lyase beta chain (EC 4.1.3.6)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1804: Citrate lyase beta chain (EC 4.1.3.6)	Variovorax paradoxus S110 Gene: Vapar_1434: Citrate lyase beta chain (EC 4.1.3.6)	Verminephrobacter eiseniae EF01-2	Citrate lyase beta chain (EC 4.1.3.6)
Aave_2209	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2209: hypothetical protein	Acidovorax sp. JS42 Gene: Ajs_2788: hypothetical protein	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0625: hypothetical protein	Delftia acidovorans SPH-1 Gene: Daci_2432: hypothetical protein	Leptothrix cholodnii SP-6 Gene: Lcho_2710: hypothetical protein	Methylibium petroleiphilum PM1 Gene: Mpe_A1366: hypothetical protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3028: hypothetical protein	Polaromonas sp. JS666 Gene: Bpro_3596: hypothetical protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1805: hypothetical protein	Variovorax paradoxus S110 Gene: Vapar_1435: hypothetical protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_4357: hypothetical protein	hypothetical protein
acnB	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2210: Aconitate hydratase (EC 4.2.1.3)	Acidovorax sp. JS42 Gene: Ajs_2787: Aconitate hydratase (EC 4.2.1.3)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0626: Aconitate hydratase (EC 4.2.1.3)	Delftia acidovorans SPH-1 Gene: Daci_2433: Aconitate hydratase (EC 4.2.1.3)	* Leptothrix cholodnii SP-6 Site: position = -114 score = 6.12548 sequence = TGGCAAGTCTTATATAAGACATAAAA Gene: Lcho_2711: Aconitate hydratase (EC 4.2.1.3)	Methylibium petroleiphilum PM1 Gene: Mpe_A1363: Aconitate hydratase (EC 4.2.1.3)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3027: Aconitate hydratase (EC 4.2.1.3)	Polaromonas sp. JS666 Gene: Bpro_3595: Aconitate hydratase (EC 4.2.1.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1806: Aconitate hydratase (EC 4.2.1.3)	Variovorax paradoxus S110 Gene: Vapar_1436: Aconitate hydratase (EC 4.2.1.3)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4358: Aconitate hydratase (EC 4.2.1.3)	Aconitate hydratase (EC 4.2.1.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SdhR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --