Regulon of SdhR in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type:	Transcription factor
TF locus tag:	Rfer_1802
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	12
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -23 Score: 6.7 Sequence: TCTTATGTCTTATATAAGATAAGATG Locus tag: Rfer_1802 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Rfer_1801 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Rfer_1800 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Rfer_1799 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Rfer_1798 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Rfer_1797 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Rfer_1796 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Rfer_1802	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Rfer_1801	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Rfer_1800	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Rfer_1799	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Rfer_1798	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Rfer_1797	COG2938	succinate dehydrogenase iron-sulfur subunit
	Rfer_1796	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -138 Score: 6.7 Sequence: CATCTTATCTTATATAAGACATAAGA Locus tag: Rfer_1803 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Rfer_1804 Name: null Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: Rfer_1805 Name: Aave_2209 Funciton: hypothetical protein Locus tag: Rfer_1806 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	Rfer_1803	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Rfer_1804		Citrate lyase beta chain (EC 4.1.3.6)
	Rfer_1805	Aave_2209	hypothetical protein
	Rfer_1806	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -124 Score: 6.7 Sequence: AAAAATGTCTTCTATAAGACATAAGA Position: -94 Score: 5.3 Sequence: TTTTTAGTCTTATACAAGACCTAAAA Locus tag: Rfer_1335 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Rfer_1335	aceA	Isocitrate lyase (EC 4.1.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD