Regulon of SdhR in Leptothrix cholodnii SP-6

Properties
Regulator type:	Transcription factor
TF locus tag:	Lcho_2707
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	11
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -114 Score: 6.1 Sequence: TGGCAAGTCTTATATAAGACATAAAA Locus tag: Lcho_2711 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	Lcho_2711	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -175 Score: 7.5 Sequence: ACAGATGTCTTATATAAGACATAAGA Locus tag: Lcho_2708 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Lcho_2709 Name: null Funciton: Citrate lyase beta chain (EC 4.1.3.6)
	Lcho_2708	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Lcho_2709		Citrate lyase beta chain (EC 4.1.3.6)
Position: -102 Score: 7.1 Sequence: ATTTATATCTTATATAAGACATAAGT Locus tag: Lcho_1744 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Lcho_1744	aceA	Isocitrate lyase (EC 4.1.3.1)
Position: -73 Score: 7.5 Sequence: TCTTATGTCTTATATAAGACATCTGT Locus tag: Lcho_2707 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Lcho_2706 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Lcho_2705 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Lcho_2704 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Lcho_2703 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Lcho_2702 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Lcho_2701 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Lcho_2707	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Lcho_2706	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Lcho_2705	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Lcho_2704	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Lcho_2703	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Lcho_2702	COG2938	succinate dehydrogenase iron-sulfur subunit
	Lcho_2701	gltA	Citrate synthase (si) (EC 2.3.3.1)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD