Regulon of SdhR in Acidovorax avenae subsp. citrulli AAC00-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Aave_2205
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	13
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -156 Score: 7 Sequence: CATCATATCTTATATAAGACATAAGA Locus tag: Aave_2206 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Aave_2207 Name: tam Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) Locus tag: Aave_2208 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: Aave_2209 Name: Aave_2209 Funciton: hypothetical protein Locus tag: Aave_2210 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	Aave_2206	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Aave_2207	tam	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
	Aave_2208	citE	Citrate lyase beta chain (EC 4.1.3.6)
	Aave_2209	Aave_2209	hypothetical protein
	Aave_2210	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -20 Score: 7 Sequence: TCTTATGTCTTATATAAGATATGATG Locus tag: Aave_2205 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Aave_2204 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Aave_2203 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Aave_2202 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Aave_2201 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Aave_2200 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Aave_2199 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Aave_2205	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Aave_2204	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Aave_2203	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Aave_2202	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Aave_2201	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Aave_2200	COG2938	succinate dehydrogenase iron-sulfur subunit
	Aave_2199	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -115 Score: 7.5 Sequence: TTTTATGTCTTATATAAGACATAAGA Locus tag: Aave_2860 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Aave_2860	aceA	Isocitrate lyase (EC 4.1.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD