Regulon of SdhR in Polaromonas naphthalenivorans CJ2

Properties
Regulator type:	Transcription factor
TF locus tag:	Pnap_3031
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	12
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -38 Score: 7.4 Sequence: TCTTATGTCTTATATAAGATATGATT Locus tag: Pnap_3031 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Pnap_3032 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Pnap_3033 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Pnap_3034 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Pnap_3035 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Pnap_3036 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Pnap_3037 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Pnap_3031	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Pnap_3032	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Pnap_3033	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Pnap_3034	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Pnap_3035	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Pnap_3036	COG2938	succinate dehydrogenase iron-sulfur subunit
	Pnap_3037	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -202 Score: 7.4 Sequence: AATCATATCTTATATAAGACATAAGA Locus tag: Pnap_3030 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Pnap_3029 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: Pnap_3028 Name: Aave_2209 Funciton: hypothetical protein Locus tag: Pnap_3027 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	Pnap_3030	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Pnap_3029	citE	Citrate lyase beta chain (EC 4.1.3.6)
	Pnap_3028	Aave_2209	hypothetical protein
	Pnap_3027	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -91 Score: 6.5 Sequence: TAAATAGTCTTATATAAGACATAAGA Locus tag: Pnap_2855 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Pnap_2855	aceA	Isocitrate lyase (EC 4.1.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD