Regulon of SdhR in Comamonas testosteroni KF-1

Properties
Regulator type:	Transcription factor
TF locus tag:	CtesDRAFT_0621
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	13
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -4 Score: 7.2 Sequence: TCTTATGTCTTATATAAGATATGATC Locus tag: CtesDRAFT_0621 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: CtesDRAFT_0620 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: CtesDRAFT_0619 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: CtesDRAFT_0618 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: CtesDRAFT_0617 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: CtesDRAFT_0616 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: CtesDRAFT_0615 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	CtesDRAFT_0621	sdhR	Transcriptional regulator of TCA cycle, GntR family
	CtesDRAFT_0620	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	CtesDRAFT_0619	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	CtesDRAFT_0618	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	CtesDRAFT_0617	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	CtesDRAFT_0616	COG2938	succinate dehydrogenase iron-sulfur subunit
	CtesDRAFT_0615	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -155 Score: 7.2 Sequence: GATCATATCTTATATAAGACATAAGA Locus tag: CtesDRAFT_0622 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: CtesDRAFT_0623 Name: tam Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) Locus tag: CtesDRAFT_0624 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: CtesDRAFT_0625 Name: Aave_2209 Funciton: hypothetical protein Locus tag: CtesDRAFT_0626 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	CtesDRAFT_0622	mdh	Malate dehydrogenase (EC 1.1.1.37)
	CtesDRAFT_0623	tam	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
	CtesDRAFT_0624	citE	Citrate lyase beta chain (EC 4.1.3.6)
	CtesDRAFT_0625	Aave_2209	hypothetical protein
	CtesDRAFT_0626	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -109 Score: 6.1 Sequence: ATTTCAGTCTTTTATAAGACATAAGA Locus tag: CtesDRAFT_0860 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	CtesDRAFT_0860	aceA	Isocitrate lyase (EC 4.1.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD