Regulon of SdhR in Acidovorax sp. JS42

Properties
Regulator type:	Transcription factor
TF locus tag:	Ajs_2792
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR - Comamonadaceae
Statistics of regulated genes:
- Genes	13
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 36 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -4 Score: 7.2 Sequence: TCTTATGTCTTATATAAGATATGATC Locus tag: Ajs_2792 Name: sdhR Funciton: Transcriptional regulator of TCA cycle, GntR family Locus tag: Ajs_2793 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: Ajs_2794 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: Ajs_2795 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Ajs_2796 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: Ajs_2797 Name: COG2938 Funciton: succinate dehydrogenase iron-sulfur subunit Locus tag: Ajs_2798 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Ajs_2792	sdhR	Transcriptional regulator of TCA cycle, GntR family
	Ajs_2793	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	Ajs_2794	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	Ajs_2795	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Ajs_2796	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Ajs_2797	COG2938	succinate dehydrogenase iron-sulfur subunit
	Ajs_2798	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -91 Score: 7.2 Sequence: GATCATATCTTATATAAGACATAAGA Locus tag: Ajs_2791 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Ajs_2790 Name: tam Funciton: Trans-aconitate 2-methyltransferase (EC 2.1.1.144) Locus tag: Ajs_2789 Name: citE Funciton: Citrate lyase beta chain (EC 4.1.3.6) Locus tag: Ajs_2788 Name: Aave_2209 Funciton: hypothetical protein Locus tag: Ajs_2787 Name: acnB Funciton: Aconitate hydratase (EC 4.2.1.3)
	Ajs_2791	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Ajs_2790	tam	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)
	Ajs_2789	citE	Citrate lyase beta chain (EC 4.1.3.6)
	Ajs_2788	Aave_2209	hypothetical protein
	Ajs_2787	acnB	Aconitate hydratase (EC 4.2.1.3)
Position: -115 Score: 6.9 Sequence: ATTTATCTCTTATATAAGACATAAGA Locus tag: Ajs_2401 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Ajs_2401	aceA	Isocitrate lyase (EC 4.1.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD