Regulon of GabR2 in Variovorax paradoxus S110
| Regulator type: | Transcription factor |
| TF locus tag: | Vapar_4694 |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Regulog: | GabR2 - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 1 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -120
Score: 14.8 Sequence: GTATGTACAGGA-(6)-ACCAGTACAGTC-(17)-CGGTGTACATGG
Locus tag: Vapar_4695
Name: gabT Funciton: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Locus tag: Vapar_4696
Name: gbtA Funciton: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
Locus tag: Vapar_4697
Name: gbtD Funciton: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
Locus tag: Vapar_4698
Name: gbtB Funciton: Predicted gamma-aminobutyrate ABC transporter, permease component
Locus tag: Vapar_4699
Name: gbtC Funciton: Predicted gamma-aminobutyrate ABC transporter, permease component
Locus tag: Vapar_4700
Name: speB Funciton: Agmatinase (EC 3.5.3.11) |
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gabT
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Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
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gbtA
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Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
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gbtD
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Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
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gbtB
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Predicted gamma-aminobutyrate ABC transporter, permease component
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gbtC
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Predicted gamma-aminobutyrate ABC transporter, permease component
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speB
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Agmatinase (EC 3.5.3.11)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |