Regulog GabR2 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2	7	1
Polaromonas sp. JS666	5	1
Rhodoferax ferrireducens DSM 15236	7	1
Variovorax paradoxus S110	6	1
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
gabT	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_2002: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Methylibium petroleiphilum PM1	* Polaromonas naphthalenivorans CJ2 Site: position = -149 score = 15.3325 sequence = GTGTGTAGAGGT-(6)-GGCAGCACAGTA-(18)-ATCTGTATATGG Gene: Pnap_2630: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Polaromonas sp. JS666 Site: position = -122 score = 14.8333 sequence = CCATGTACAGCA-(6)-ACCCGCACAGTG-(17)-AGCTGTACATGG Gene: Bpro_2912: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Rhodoferax ferrireducens DSM 15236 Site: position = -126 score = 15.3325 sequence = GTATGTAGCGGT-(6)-GGCTGCACAGTG-(17)-ATCTGTATATGG Gene: Rfer_0592: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Variovorax paradoxus S110 Site: position = -120 score = 14.8447 sequence = GTATGTACAGGA-(6)-ACCAGTACAGTC-(17)-CGGTGTACATGG Gene: Vapar_4695: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Verminephrobacter eiseniae EF01-2	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gbtA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2631: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Polaromonas sp. JS666 Gene: Bpro_2913: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0593: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Variovorax paradoxus S110 Gene: Vapar_4696: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Verminephrobacter eiseniae EF01-2 Gene: Veis_4045: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2632: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Polaromonas sp. JS666 Gene: Bpro_2914: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0594: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Variovorax paradoxus S110 Gene: Vapar_4697: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_4044: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2633: Predicted gamma-aminobutyrate ABC transporter, permease component	Polaromonas sp. JS666 Gene: Bpro_2915: Predicted gamma-aminobutyrate ABC transporter, permease component	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0595: Predicted gamma-aminobutyrate ABC transporter, permease component	Variovorax paradoxus S110 Gene: Vapar_4698: Predicted gamma-aminobutyrate ABC transporter, permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_4043: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2634: Predicted gamma-aminobutyrate ABC transporter, permease component	Polaromonas sp. JS666 Gene: Bpro_2916: Predicted gamma-aminobutyrate ABC transporter, permease component	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0596: Predicted gamma-aminobutyrate ABC transporter, permease component	Variovorax paradoxus S110 Gene: Vapar_4699: Predicted gamma-aminobutyrate ABC transporter, permease component	Verminephrobacter eiseniae EF01-2 Gene: Veis_4042: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component
speB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2635: Agmatinase (EC 3.5.3.11)	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0597: Agmatinase (EC 3.5.3.11)	Variovorax paradoxus S110 Gene: Vapar_4700: Agmatinase (EC 3.5.3.11)	Verminephrobacter eiseniae EF01-2	Agmatinase (EC 3.5.3.11)
gabD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_1978: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_2003: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Methylibium petroleiphilum PM1 Gene: Mpe_A2324: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2636: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Polaromonas sp. JS666 Gene: Bpro_2917: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0598: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Variovorax paradoxus S110 Gene: Vapar_4701: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4041: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR2 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --