Regulog GabR2 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | 7 | 1 |
| Polaromonas sp. JS666 | 5 | 1 |
| Rhodoferax ferrireducens DSM 15236 | 7 | 1 |
| Variovorax paradoxus S110 | 6 | 1 |
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| gabT |
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Gene: Lcho_2002: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Polaromonas naphthalenivorans CJ2 Site: position = -149 score = 15.3325 sequence = GTGTGTAGAGGT-(6)-GGCAGCACAGTA-(18)-ATCTGTATATGG Gene: Pnap_2630: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Polaromonas sp. JS666 Site: position = -122 score = 14.8333 sequence = CCATGTACAGCA-(6)-ACCCGCACAGTG-(17)-AGCTGTACATGG Gene: Bpro_2912: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Rhodoferax ferrireducens DSM 15236 Site: position = -126 score = 15.3325 sequence = GTATGTAGCGGT-(6)-GGCTGCACAGTG-(17)-ATCTGTATATGG Gene: Rfer_0592: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Variovorax paradoxus S110 Site: position = -120 score = 14.8447 sequence = GTATGTACAGGA-(6)-ACCAGTACAGTC-(17)-CGGTGTACATGG Gene: Vapar_4695: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
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Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gbtA |
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Gene: Pnap_2631: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Gene: Bpro_2913: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Gene: Rfer_0593: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Gene: Vapar_4696: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Gene: Veis_4045: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
| gbtD |
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Gene: Pnap_2632: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: Bpro_2914: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: Rfer_0594: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: Vapar_4697: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: Veis_4044: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
| gbtB |
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Gene: Pnap_2633: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Bpro_2915: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Rfer_0595: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Vapar_4698: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Veis_4043: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
| gbtC |
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Gene: Pnap_2634: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Bpro_2916: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Rfer_0596: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Vapar_4699: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Veis_4042: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
| speB |
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Gene: Pnap_2635: Agmatinase (EC 3.5.3.11) |
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Gene: Rfer_0597: Agmatinase (EC 3.5.3.11) |
Gene: Vapar_4700: Agmatinase (EC 3.5.3.11) |
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Agmatinase (EC 3.5.3.11) |
| gabD |
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Gene: Ajs_1978: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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Gene: Lcho_2003: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Mpe_A2324: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Pnap_2636: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Bpro_2917: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Rfer_0598: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Vapar_4701: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Veis_4041: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |