Regulon of GabR2 in Rhodoferax ferrireducens DSM 15236
| Regulator type: | Transcription factor |
| TF locus tag: | Rfer_0591 |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Regulog: | GabR2 - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 1 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -126
Score: 15.3 Sequence: GTATGTAGCGGT-(6)-GGCTGCACAGTG-(17)-ATCTGTATATGG
Locus tag: Rfer_0592
Name: gabT Funciton: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Locus tag: Rfer_0593
Name: gbtA Funciton: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
Locus tag: Rfer_0594
Name: gbtD Funciton: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
Locus tag: Rfer_0595
Name: gbtB Funciton: Predicted gamma-aminobutyrate ABC transporter, permease component
Locus tag: Rfer_0596
Name: gbtC Funciton: Predicted gamma-aminobutyrate ABC transporter, permease component
Locus tag: Rfer_0597
Name: speB Funciton: Agmatinase (EC 3.5.3.11)
Locus tag: Rfer_0598
Name: gabD Funciton: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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gabT
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Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
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gbtA
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Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
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gbtD
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Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
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gbtB
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Predicted gamma-aminobutyrate ABC transporter, permease component
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gbtC
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Predicted gamma-aminobutyrate ABC transporter, permease component
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speB
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Agmatinase (EC 3.5.3.11)
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gabD
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Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |