Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pseudoalteromonas atlantica T6c

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 5
TF BirA Biotin Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 4
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 5
TF Fur Iron ion, (Fe2+) Iron homeostasis 20 18
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 15 9
TF HutC cis-Urocanic acid Histidine utilization 3 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 4
TF LexA DNA damage SOS response 13 15
TF LiuR Branched-chain amino acid degradation 12 6
TF MalR Maltose Maltose utilization; Maltodextrin utilization 8 7
TF ManR2 Mannose Mannosides utilization; Mannose utilization 3 5
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 11 12
TF NorR Nitric oxide Nitrosative stress response 2 6
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF Patl_0292 2 2
TF PdhR Pyruvate Pyruvate metabolism 3 1
TF PrpR 2-methylcitrate Methylcitrate utilization 1 2
TF RutR Uracil Pyrimidine utilization 8 7
TF ScrR Sucrose Sucrose utilization 4 5
TF Sde_0506 Sugar utilization 2 4
TF SoxR Paraquat Superoxide stress response 1 1
TF TreR Trehalose Trehalose utilization 3 5
TF TyrR1 Tyrosine; Phenylalanine Aromatic amino acid metabolism 5 6
TF VanR Vanillate Vanillate utilization 5 12
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 8 10
RNA MOCO_RNA_motif Molybdenum Molybdenum homeostasis; Molybdopterin biosynthesis 1 1
RNA TPP 2 2
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