Regulon of LiuR in Pseudoalteromonas atlantica T6c

Properties
Regulator type:	Transcription factor
TF locus tag:	Patl_2924
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Alteromonadales
Statistics of regulated genes:
- Genes	14
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Alteromonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -109 Score: 5.7 Sequence: CTTTACCTTTACGTTAAG Position: -86 Score: 6.1 Sequence: CTTTACGTAAACGTAAAG Locus tag: Patl_2924 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: Patl_2925 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) Locus tag: Patl_2926 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: Patl_2927 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: Patl_2928 Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Locus tag: Patl_2929 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	Patl_2924	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Patl_2925	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
	Patl_2926	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	Patl_2927	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	Patl_2928	liuD	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
	Patl_2929	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -102 Score: 5.4 Sequence: ACTGACGTTAACGTAAAG Locus tag: Patl_0948 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Patl_0949 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Patl_0950 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Patl_0951 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Patl_0952 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	Patl_0948	ivdB	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
	Patl_0949	ivdC	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
	Patl_0950	ivdE	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
	Patl_0951	ivdF	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
	Patl_0952	ivdG	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -211 Score: 6.3 Sequence: CTTTACGTTTACGTAAAG Position: -188 Score: 5.2 Sequence: CTTAACGTAAAGGTAAAG Locus tag: Patl_2923 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	Patl_2923	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Position: -32 Score: 5.3 Sequence: GTTGACGTGTACGTCAAC Locus tag: Patl_2146 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Patl_2145 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	Patl_2146	etfB	Electron transfer flavoprotein, beta subunit
	Patl_2145	etfA	Electron transfer flavoprotein, alpha subunit

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD